Variant report

Variant	rs9688402
Chromosome Location	chr6:36867733-36867734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36853537..36856714-chr6:36865355..36869958,4	K562	blood:
2	chr6:36867430..36871951-chr6:36875008..36877997,4	K562	blood:
3	chr6:36852943..36861433-chr6:36865588..36872573,10	K562	blood:
4	chr6:36861808..36863466-chr6:36867005..36869478,2	K562	blood:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10080913	1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[EUR][1000 genomes]
rs57275916	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57680472	1.00[EUR][1000 genomes]
rs58376164	1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6931465	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6932579	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	1.00[EUR][1000 genomes]
rs73420362	1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	1.00[EUR][1000 genomes]
rs9296202	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462242	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462243	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	1.00[EUR][1000 genomes]
rs9462246	1.00[EUR][1000 genomes]
rs9462247	1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	1.00[EUR][1000 genomes]
rs9470436	1.00[EUR][1000 genomes]
rs9470437	1.00[EUR][1000 genomes]
rs9470438	1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36854200-36868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:36854200-36873600	Weak transcription	Aorta	Aorta
3	chr6:36854200-36881000	Weak transcription	Gastric	stomach
4	chr6:36854200-36887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:36854400-36868400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:36854400-36893000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:36854600-36869600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:36854600-36870000	Weak transcription	Stomach Mucosa	stomach
9	chr6:36854800-36868400	Weak transcription	Brain Germinal Matrix	brain
10	chr6:36854800-36870000	Weak transcription	Colonic Mucosa	Colon
11	chr6:36854800-36875200	Weak transcription	Esophagus	oesophagus
12	chr6:36854800-36881000	Weak transcription	A549	lung
13	chr6:36854800-36882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:36854800-36884600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:36855400-36868400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:36855400-36869800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:36855400-36869800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:36855400-36869800	Weak transcription	Fetal Lung	lung
19	chr6:36855400-36870000	Weak transcription	Hela-S3	cervix
20	chr6:36855400-36881000	Weak transcription	Small Intestine	intestine
21	chr6:36855800-36869800	Weak transcription	Fetal Brain Male	brain
22	chr6:36856200-36869800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:36856800-36869800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:36857000-36874400	Weak transcription	Pancreas	Pancrea
25	chr6:36857200-36870000	Weak transcription	Psoas Muscle	Psoas
26	chr6:36857400-36869800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:36858000-36869800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:36859600-36879400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:36860600-36869800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:36860800-36868200	Weak transcription	Ovary	ovary
31	chr6:36861200-36879000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:36862000-36875800	Strong transcription	Dnd41	blood
33	chr6:36862600-36868200	Weak transcription	Brain Angular Gyrus	brain
34	chr6:36862600-36869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:36862800-36868200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:36862800-36869800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:36863000-36868200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:36863000-36869800	Weak transcription	HMEC	breast
39	chr6:36863600-36869800	Weak transcription	Primary B cells from cord blood	blood
40	chr6:36864600-36871800	Strong transcription	Fetal Stomach	stomach
41	chr6:36864600-36881200	Strong transcription	Fetal Intestine Small	intestine
42	chr6:36865400-36868800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:36865400-36873200	Strong transcription	Primary T cells from cord blood	blood
44	chr6:36865400-36874200	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:36865400-36876600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:36865600-36871200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:36866000-36869000	Strong transcription	Lung	lung
48	chr6:36866000-36870000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:36866000-36871600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:36866000-36875800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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