Variant report

Variant	rs9470438
Chromosome Location	chr6:36898889-36898890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36875356..36877427-chr6:36898111..36899738,2	K562	blood:
2	chr6:36898801..36900739-chr6:36904348..36905974,2	K562	blood:
3	chr6:36897578..36900278-chr6:36906376..36909115,2	K562	blood:
4	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:
5	chr6:36896194..36898898-chr6:36953631..36956084,2	K562	blood:
6	chr6:36897578..36900528-chr6:36906376..36908738,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10080913	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57275916	1.00[EUR][1000 genomes]
rs57680472	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58376164	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420362	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422723	1.00[AMR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9296202	1.00[EUR][1000 genomes]
rs9462242	1.00[EUR][1000 genomes]
rs9462243	1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462246	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462247	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470436	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470437	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:36884800-36901200	Weak transcription	HMEC	breast
3	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:36892200-36900600	Weak transcription	HUVEC	blood vessel
5	chr6:36892600-36900800	Weak transcription	NHEK	skin
6	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
7	chr6:36893200-36900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
9	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:36894000-36901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:36894400-36899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:36894800-36901000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:36895400-36899600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:36895800-36899800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:36896200-36900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:36896400-36899000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:36896600-36899800	Weak transcription	Placenta	Placenta
21	chr6:36896600-36901400	Weak transcription	Fetal Thymus	thymus
22	chr6:36897000-36903600	Weak transcription	Fetal Stomach	stomach
23	chr6:36897200-36899600	Weak transcription	Lung	lung
24	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:36898000-36900800	Weak transcription	Osteobl	bone
26	chr6:36898200-36899600	Weak transcription	NHDF-Ad	bronchial
27	chr6:36898200-36901000	Weak transcription	Adipose Nuclei	Adipose
28	chr6:36898200-36901400	Weak transcription	NH-A	brain
29	chr6:36898200-36902200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:36898400-36900400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:36898400-36900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:36898400-36901200	Enhancers	Hela-S3	cervix
33	chr6:36898600-36900600	Weak transcription	NHLF	lung
34	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
35	chr6:36898800-36900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:36898800-36900600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:36898800-36900600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart

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