Variant report

Variant	rs59341304
Chromosome Location	chr6:36879275-36879276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36877418..36880214-chr6:36894760..36897203,2	K562	blood:
2	chr6:36878376..36882517-chr6:36952548..36956029,4	MCF-7	breast:
3	chr6:36874669..36878220-chr6:36879029..36882017,3	MCF-7	breast:
4	chr6:36879267..36882648-chr6:36885620..36888336,3	K562	blood:
5	chr6:36841357..36843245-chr6:36878241..36882187,3	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10080913	1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[EUR][1000 genomes]
rs57275916	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57680472	1.00[EUR][1000 genomes]
rs58376164	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	1.00[EUR][1000 genomes]
rs73420362	1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	1.00[EUR][1000 genomes]
rs9296202	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462242	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462243	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	1.00[EUR][1000 genomes]
rs9462246	1.00[EUR][1000 genomes]
rs9462247	1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	1.00[EUR][1000 genomes]
rs9470436	1.00[EUR][1000 genomes]
rs9470437	1.00[EUR][1000 genomes]
rs9470438	1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36854200-36881000	Weak transcription	Gastric	stomach
2	chr6:36854200-36887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:36854400-36893000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:36854800-36881000	Weak transcription	A549	lung
5	chr6:36854800-36882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:36854800-36884600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:36855400-36881000	Weak transcription	Small Intestine	intestine
8	chr6:36859600-36879400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:36864600-36881200	Strong transcription	Fetal Intestine Small	intestine
10	chr6:36866200-36896400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:36866800-36881600	Strong transcription	Fetal Intestine Large	intestine
12	chr6:36867000-36897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:36868600-36882000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:36869800-36881400	Strong transcription	HepG2	liver
15	chr6:36870600-36882000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:36870600-36882000	Weak transcription	Fetal Kidney	kidney
17	chr6:36870800-36889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:36871000-36879400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:36871000-36879800	Weak transcription	HMEC	breast
20	chr6:36871000-36888400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:36871200-36882000	Weak transcription	Hela-S3	cervix
22	chr6:36872400-36879400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:36872800-36879800	Weak transcription	HSMMtube	muscle
24	chr6:36873200-36881000	Weak transcription	Colonic Mucosa	Colon
25	chr6:36873400-36879400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:36873400-36880200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:36873400-36880400	Weak transcription	Lung	lung
28	chr6:36874000-36879400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:36874000-36879400	Weak transcription	GM12878-XiMat	blood
30	chr6:36874000-36879600	Weak transcription	NHLF	lung
31	chr6:36874000-36879800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:36874000-36879800	Weak transcription	Osteobl	bone
33	chr6:36874000-36882000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36874800-36879400	Weak transcription	HUVEC	blood vessel
35	chr6:36874800-36879400	Weak transcription	NHDF-Ad	bronchial
36	chr6:36874800-36880800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:36875600-36879800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:36875600-36879800	Weak transcription	NH-A	brain
39	chr6:36875800-36879400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:36875800-36879400	Weak transcription	Brain Anterior Caudate	brain
41	chr6:36875800-36879400	Weak transcription	Fetal Brain Female	brain
42	chr6:36875800-36879400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:36875800-36879600	Weak transcription	Brain Germinal Matrix	brain
44	chr6:36875800-36880000	Weak transcription	Fetal Brain Male	brain
45	chr6:36875800-36881000	Weak transcription	Esophagus	oesophagus
46	chr6:36875800-36881000	Weak transcription	Stomach Mucosa	stomach
47	chr6:36876000-36879400	Weak transcription	Primary T cells from cord blood	blood
48	chr6:36876000-36879400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:36876000-36879400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:36876000-36879400	Weak transcription	Fetal Lung	lung

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