Variant report

Variant	rs6932789
Chromosome Location	chr6:36930396-36930397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36928773..36930576-chr6:36930676..36932270,2	MCF-7	breast:
2	chr6:36929829..36933522-chr6:36953197..36956380,5	MCF-7	breast:
3	chr6:36928588..36930558-chr6:36986253..36988587,2	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10080913	1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[EUR][1000 genomes]
rs57275916	1.00[EUR][1000 genomes]
rs57680472	1.00[EUR][1000 genomes]
rs58376164	1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	1.00[EUR][1000 genomes]
rs73420361	1.00[EUR][1000 genomes]
rs73420362	1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	1.00[EUR][1000 genomes]
rs9296202	1.00[EUR][1000 genomes]
rs9296203	1.00[AMR][1000 genomes]
rs9462242	1.00[EUR][1000 genomes]
rs9462243	1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	1.00[EUR][1000 genomes]
rs9462246	1.00[EUR][1000 genomes]
rs9462247	1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	1.00[EUR][1000 genomes]
rs9470436	1.00[EUR][1000 genomes]
rs9470437	1.00[EUR][1000 genomes]
rs9470438	1.00[EUR][1000 genomes]
rs9470446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36917600-36931200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:36921800-36931200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:36922000-36931000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:36923400-36930600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:36923400-36930600	Weak transcription	GM12878-XiMat	blood
6	chr6:36923400-36931000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:36923400-36931000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:36924800-36930600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:36927000-36931600	Weak transcription	Lung	lung
10	chr6:36927200-36930400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:36927200-36930400	Enhancers	Fetal Thymus	thymus
12	chr6:36927200-36931000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:36927200-36931600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:36927200-36933400	Enhancers	Stomach Mucosa	stomach
15	chr6:36927400-36931000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36927800-36933200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:36928000-36931200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:36928000-36933600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:36928600-36935000	Weak transcription	HSMMtube	muscle
21	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
22	chr6:36928800-36930600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:36928800-36934000	Weak transcription	HSMM	muscle
24	chr6:36928800-36935000	Weak transcription	HUVEC	blood vessel
25	chr6:36929000-36930400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:36929000-36930600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:36929000-36931000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:36929000-36934200	Weak transcription	Osteobl	bone
29	chr6:36929000-36934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:36929000-36934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:36929000-36935400	Weak transcription	Ovary	ovary
33	chr6:36929000-36935400	Weak transcription	A549	lung
34	chr6:36929200-36930600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:36929200-36931000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:36929200-36931000	Weak transcription	NHEK	skin
37	chr6:36929200-36931400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:36929200-36931400	Enhancers	Spleen	Spleen
39	chr6:36929200-36931800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:36929200-36934600	Weak transcription	NH-A	brain
41	chr6:36929400-36930600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:36929400-36930600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:36929400-36931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:36929400-36931000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:36929400-36931000	Weak transcription	Brain Anterior Caudate	brain
46	chr6:36929400-36931000	Weak transcription	Esophagus	oesophagus
47	chr6:36929400-36931200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:36929400-36931200	Weak transcription	Left Ventricle	heart
49	chr6:36929400-36934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:36929400-36935200	Weak transcription	K562	blood

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