Variant report

Variant	rs61140519
Chromosome Location	chr6:36904707-36904708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36899307..36901257-chr6:36904515..36906513,2	MCF-7	breast:
2	chr6:36903375..36906327-chr6:36934903..36936989,2	MCF-7	breast:
3	chr6:36898801..36900739-chr6:36904348..36905974,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10080913	1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[EUR][1000 genomes]
rs57275916	1.00[EUR][1000 genomes]
rs57680472	1.00[EUR][1000 genomes]
rs58376164	1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6918608	0.91[AFR][1000 genomes]
rs6927474	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	1.00[EUR][1000 genomes]
rs73420362	1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73732102	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7752720	1.00[EUR][1000 genomes]
rs9296202	1.00[EUR][1000 genomes]
rs9462237	0.91[AFR][1000 genomes]
rs9462242	1.00[EUR][1000 genomes]
rs9462243	1.00[EUR][1000 genomes]
rs9462244	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462245	1.00[EUR][1000 genomes]
rs9462246	1.00[EUR][1000 genomes]
rs9462247	1.00[EUR][1000 genomes]
rs9470433	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470435	1.00[EUR][1000 genomes]
rs9470436	1.00[EUR][1000 genomes]
rs9470437	1.00[EUR][1000 genomes]
rs9470438	1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
3	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
8	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart
10	chr6:36901600-36906200	Enhancers	Hela-S3	cervix
11	chr6:36901600-36906200	Weak transcription	HMEC	breast
12	chr6:36901600-36906400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:36901800-36905200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:36901800-36905800	Weak transcription	NHLF	lung
15	chr6:36901800-36906000	Weak transcription	Osteobl	bone
16	chr6:36902000-36906400	Weak transcription	NHDF-Ad	bronchial
17	chr6:36902200-36906200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:36902200-36906600	Weak transcription	Fetal Thymus	thymus
19	chr6:36902800-36906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:36903200-36906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36903200-36906200	Weak transcription	NHEK	skin
22	chr6:36904000-36905000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:36904000-36906000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:36904000-36907200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:36904600-36904800	Bivalent Enhancer	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links