Variant report

Variant	rs9462247
Chromosome Location	chr6:36886271-36886272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36886112..36887958-chr6:36978149..36979897,2	MCF-7	breast:
2	chr6:36841727..36844418-chr6:36884410..36887065,2	K562	blood:
3	chr6:36879267..36882648-chr6:36885620..36888336,3	K562	blood:
4	chr6:36885661..36888291-chr6:36984443..36986353,2	MCF-7	breast:
5	chr6:36885599..36889594-chr6:36935719..36938209,3	MCF-7	breast:
6	chr6:36743912..36745696-chr6:36885274..36887622,2	K562	blood:
7	chr6:36885468..36888392-chr6:36943726..36946366,2	MCF-7	breast:
8	chr6:36886183..36886832-chr6:36986137..36986795,2	MCF-7	breast:
9	chr6:36884977..36888283-chr6:36895013..36898238,3	K562	blood:
10	chr6:36872618..36878206-chr6:36882033..36886554,6	K562	blood:
11	chr6:36875857..36878206-chr6:36884249..36886554,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10080913	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57275916	1.00[EUR][1000 genomes]
rs57680472	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58376164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420362	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9296202	1.00[EUR][1000 genomes]
rs9462242	1.00[EUR][1000 genomes]
rs9462243	1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462246	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470436	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470438	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36854200-36887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:36854400-36893000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:36866200-36896400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36867000-36897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:36870800-36889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:36871000-36888400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:36877800-36896000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:36879400-36894000	Strong transcription	Fetal Brain Female	brain
9	chr6:36879600-36894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:36879600-36895400	Strong transcription	Brain Germinal Matrix	brain
11	chr6:36880000-36892000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:36880200-36887800	Strong transcription	Adipose Nuclei	Adipose
13	chr6:36880200-36893800	Strong transcription	K562	blood
14	chr6:36880400-36888000	Strong transcription	Brain Angular Gyrus	brain
15	chr6:36880600-36893600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:36880800-36889800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:36881000-36892000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:36881000-36894800	Weak transcription	Fetal Brain Male	brain
20	chr6:36881200-36886400	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr6:36881200-36887200	Genic enhancers	Fetal Thymus	thymus
22	chr6:36881200-36889600	Strong transcription	Brain Hippocampus Middle	brain
23	chr6:36881400-36893000	Strong transcription	Spleen	Spleen
24	chr6:36881400-36893600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:36881400-36893800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:36881400-36896200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:36881600-36889600	Strong transcription	Brain Cingulate Gyrus	brain
28	chr6:36881600-36891200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:36882000-36891600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:36882000-36893800	Strong transcription	Liver	Liver
31	chr6:36882200-36889200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:36882200-36891000	Strong transcription	Thymus	Thymus
33	chr6:36882200-36892000	Strong transcription	Brain Anterior Caudate	brain
34	chr6:36882200-36894000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:36882400-36886400	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr6:36882400-36887000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:36882400-36887400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:36882400-36891200	Weak transcription	HUVEC	blood vessel
39	chr6:36882400-36891800	Strong transcription	Primary T cells from cord blood	blood
40	chr6:36882400-36893000	Strong transcription	Fetal Intestine Large	intestine
41	chr6:36882400-36893600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:36882400-36893800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr6:36882400-36894800	Strong transcription	Fetal Intestine Small	intestine
44	chr6:36882400-36895600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:36882400-36896800	Weak transcription	Hela-S3	cervix
46	chr6:36882600-36889800	Strong transcription	Primary B cells from cord blood	blood
47	chr6:36882600-36893800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:36882600-36893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:36882600-36893800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:36882600-36894000	Strong transcription	Dnd41	blood

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