Variant report

Variant	rs57686668
Chromosome Location	chr3:82130341-82130342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56234756	0.81[AFR][1000 genomes]
rs56265350	0.81[AFR][1000 genomes]
rs58147634	0.81[AFR][1000 genomes]
rs58266245	0.81[AFR][1000 genomes]
rs59072995	1.00[AFR][1000 genomes]
rs59175114	0.81[AFR][1000 genomes]
rs60454714	0.81[AFR][1000 genomes]
rs61368572	0.81[AFR][1000 genomes]
rs61645230	1.00[AFR][1000 genomes]
rs73841289	0.81[AFR][1000 genomes]
rs73841290	0.81[AFR][1000 genomes]
rs73841291	0.81[AFR][1000 genomes]
rs73841295	0.81[AFR][1000 genomes]
rs73841296	0.81[AFR][1000 genomes]
rs73841297	0.81[AFR][1000 genomes]
rs73841299	0.81[AFR][1000 genomes]
rs73841522	0.81[AFR][1000 genomes]
rs73841524	0.81[AFR][1000 genomes]
rs73841526	0.81[AFR][1000 genomes]
rs73841527	0.81[AFR][1000 genomes]
rs73841528	0.81[AFR][1000 genomes]
rs73841917	0.88[AFR][1000 genomes]
rs73841918	1.00[AFR][1000 genomes]
rs73841919	1.00[AFR][1000 genomes]
rs73841922	1.00[AFR][1000 genomes]
rs73843052	0.81[AFR][1000 genomes]
rs73843053	0.81[AFR][1000 genomes]
rs73843055	0.81[AFR][1000 genomes]
rs73843056	0.81[AFR][1000 genomes]
rs73843059	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82128000-82130600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:82128000-82131200	Enhancers	HUVEC	blood vessel
3	chr3:82129400-82130400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:82129400-82130600	Enhancers	NH-A	brain
5	chr3:82129400-82130800	Enhancers	NHEK	skin
6	chr3:82129400-82131000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:82129400-82131200	Enhancers	HMEC	breast
8	chr3:82129400-82132400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:82129600-82130400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:82129600-82130400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:82129600-82130800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:82129800-82130600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:82129800-82130800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:82130000-82130800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:82130000-82130800	Enhancers	HSMM	muscle
16	chr3:82130000-82132000	Weak transcription	Primary B cells from cord blood	blood
17	chr3:82130000-82133200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:82130200-82130600	Enhancers	Osteobl	bone
19	chr3:82130200-82130800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:82130200-82132800	Enhancers	Dnd41	blood
21	chr3:82130200-82133400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:82130200-82133600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:82130200-82133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:82130200-82133600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:82130200-82134000	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:82130200-82134400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:82130200-82134600	Weak transcription	HSMMtube	muscle

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