Variant report

Variant	rs73841299
Chromosome Location	chr3:82107450-82107451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56234756	1.00[AFR][1000 genomes]
rs56265350	1.00[AFR][1000 genomes]
rs57686668	0.81[AFR][1000 genomes]
rs58147634	1.00[AFR][1000 genomes]
rs58266245	1.00[AFR][1000 genomes]
rs59072995	0.81[AFR][1000 genomes]
rs59175114	1.00[AFR][1000 genomes]
rs60361198	0.89[AFR][1000 genomes]
rs60454714	1.00[AFR][1000 genomes]
rs61368572	1.00[AFR][1000 genomes]
rs61645230	0.81[AFR][1000 genomes]
rs73841289	1.00[AFR][1000 genomes]
rs73841290	1.00[AFR][1000 genomes]
rs73841291	1.00[AFR][1000 genomes]
rs73841295	1.00[AFR][1000 genomes]
rs73841296	1.00[AFR][1000 genomes]
rs73841297	1.00[AFR][1000 genomes]
rs73841521	0.89[AFR][1000 genomes]
rs73841522	1.00[AFR][1000 genomes]
rs73841524	1.00[AFR][1000 genomes]
rs73841526	1.00[AFR][1000 genomes]
rs73841527	1.00[AFR][1000 genomes]
rs73841528	1.00[AFR][1000 genomes]
rs73841918	0.81[AFR][1000 genomes]
rs73841919	0.81[AFR][1000 genomes]
rs73841922	0.81[AFR][1000 genomes]
rs73843051	0.94[AFR][1000 genomes]
rs73843052	1.00[AFR][1000 genomes]
rs73843053	1.00[AFR][1000 genomes]
rs73843055	1.00[AFR][1000 genomes]
rs73843056	1.00[AFR][1000 genomes]
rs73843059	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82105200-82108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:82105400-82107800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:82105400-82108000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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