Variant report
| Variant | rs73841527 |
|---|---|
| Chromosome Location | chr3:82032889-82032890 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr3:82032591-82032898 | IMR90 | lung: | n/a | chr3:82032729-82032745 chr3:82032729-82032740 chr3:82032729-82032740 chr3:82032729-82032744 chr3:82032728-82032742 |
| 2 | MAFK | chr3:82032558-82032910 | HepG2 | liver: | n/a | chr3:82032729-82032745 chr3:82032729-82032740 chr3:82032729-82032740 chr3:82032729-82032744 chr3:82032728-82032742 |
| 3 | MAFK | chr3:82032566-82032902 | HepG2 | liver: | n/a | chr3:82032729-82032745 chr3:82032729-82032740 chr3:82032729-82032740 chr3:82032729-82032744 chr3:82032728-82032742 |
| 4 | MAFF | chr3:82032600-82032902 | K562 | blood: | n/a | chr3:82032727-82032745 |
| 5 | MAFF | chr3:82032567-82032904 | HepG2 | liver: | n/a | chr3:82032727-82032745 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000239440 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs56234756 | 1.00[AFR][1000 genomes] |
| rs56265350 | 1.00[AFR][1000 genomes] |
| rs57686668 | 0.81[AFR][1000 genomes] |
| rs58147634 | 1.00[AFR][1000 genomes] |
| rs58266245 | 1.00[AFR][1000 genomes] |
| rs59072995 | 0.81[AFR][1000 genomes] |
| rs59175114 | 1.00[AFR][1000 genomes] |
| rs60361198 | 0.89[AFR][1000 genomes] |
| rs60454714 | 1.00[AFR][1000 genomes] |
| rs61368572 | 1.00[AFR][1000 genomes] |
| rs61645230 | 0.81[AFR][1000 genomes] |
| rs73841289 | 1.00[AFR][1000 genomes] |
| rs73841290 | 1.00[AFR][1000 genomes] |
| rs73841291 | 1.00[AFR][1000 genomes] |
| rs73841295 | 1.00[AFR][1000 genomes] |
| rs73841296 | 1.00[AFR][1000 genomes] |
| rs73841297 | 1.00[AFR][1000 genomes] |
| rs73841299 | 1.00[AFR][1000 genomes] |
| rs73841521 | 0.89[AFR][1000 genomes] |
| rs73841522 | 1.00[AFR][1000 genomes] |
| rs73841524 | 1.00[AFR][1000 genomes] |
| rs73841526 | 1.00[AFR][1000 genomes] |
| rs73841528 | 1.00[AFR][1000 genomes] |
| rs73841918 | 0.81[AFR][1000 genomes] |
| rs73841919 | 0.81[AFR][1000 genomes] |
| rs73841922 | 0.81[AFR][1000 genomes] |
| rs73843051 | 0.94[AFR][1000 genomes] |
| rs73843052 | 1.00[AFR][1000 genomes] |
| rs73843053 | 1.00[AFR][1000 genomes] |
| rs73843055 | 1.00[AFR][1000 genomes] |
| rs73843056 | 1.00[AFR][1000 genomes] |
| rs73843059 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752870 | chr3:82014410-82050310 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82031000-82038200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
