Variant report
| Variant | rs73843052 |
|---|---|
| Chromosome Location | chr3:82040457-82040458 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs56234756 | 1.00[AFR][1000 genomes] |
| rs56265350 | 1.00[AFR][1000 genomes] |
| rs57686668 | 0.81[AFR][1000 genomes] |
| rs58147634 | 1.00[AFR][1000 genomes] |
| rs58266245 | 1.00[AFR][1000 genomes] |
| rs59072995 | 0.81[AFR][1000 genomes] |
| rs59175114 | 1.00[AFR][1000 genomes] |
| rs60361198 | 0.89[AFR][1000 genomes] |
| rs60454714 | 1.00[AFR][1000 genomes] |
| rs61368572 | 1.00[AFR][1000 genomes] |
| rs61645230 | 0.81[AFR][1000 genomes] |
| rs73841289 | 1.00[AFR][1000 genomes] |
| rs73841290 | 1.00[AFR][1000 genomes] |
| rs73841291 | 1.00[AFR][1000 genomes] |
| rs73841295 | 1.00[AFR][1000 genomes] |
| rs73841296 | 1.00[AFR][1000 genomes] |
| rs73841297 | 1.00[AFR][1000 genomes] |
| rs73841299 | 1.00[AFR][1000 genomes] |
| rs73841521 | 0.89[AFR][1000 genomes] |
| rs73841522 | 1.00[AFR][1000 genomes] |
| rs73841524 | 1.00[AFR][1000 genomes] |
| rs73841526 | 1.00[AFR][1000 genomes] |
| rs73841527 | 1.00[AFR][1000 genomes] |
| rs73841528 | 1.00[AFR][1000 genomes] |
| rs73841918 | 0.81[AFR][1000 genomes] |
| rs73841919 | 0.81[AFR][1000 genomes] |
| rs73841922 | 0.81[AFR][1000 genomes] |
| rs73843051 | 0.94[AFR][1000 genomes] |
| rs73843053 | 1.00[AFR][1000 genomes] |
| rs73843055 | 1.00[AFR][1000 genomes] |
| rs73843056 | 1.00[AFR][1000 genomes] |
| rs73843059 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752870 | chr3:82014410-82050310 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82039400-82046000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr3:82039800-82041400 | Strong transcription | HepG2 | liver |
