Variant report

Variant	rs73841296
Chromosome Location	chr3:82100044-82100045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56234756	1.00[AFR][1000 genomes]
rs56265350	1.00[AFR][1000 genomes]
rs57686668	0.81[AFR][1000 genomes]
rs58147634	1.00[AFR][1000 genomes]
rs58266245	1.00[AFR][1000 genomes]
rs59072995	0.81[AFR][1000 genomes]
rs59175114	1.00[AFR][1000 genomes]
rs60361198	0.89[AFR][1000 genomes]
rs60454714	1.00[AFR][1000 genomes]
rs61368572	1.00[AFR][1000 genomes]
rs61645230	0.81[AFR][1000 genomes]
rs73841289	1.00[AFR][1000 genomes]
rs73841290	1.00[AFR][1000 genomes]
rs73841291	1.00[AFR][1000 genomes]
rs73841295	1.00[AFR][1000 genomes]
rs73841297	1.00[AFR][1000 genomes]
rs73841299	1.00[AFR][1000 genomes]
rs73841521	0.89[AFR][1000 genomes]
rs73841522	1.00[AFR][1000 genomes]
rs73841524	1.00[AFR][1000 genomes]
rs73841526	1.00[AFR][1000 genomes]
rs73841527	1.00[AFR][1000 genomes]
rs73841528	1.00[AFR][1000 genomes]
rs73841918	0.81[AFR][1000 genomes]
rs73841919	0.81[AFR][1000 genomes]
rs73841922	0.81[AFR][1000 genomes]
rs73843051	0.94[AFR][1000 genomes]
rs73843052	1.00[AFR][1000 genomes]
rs73843053	1.00[AFR][1000 genomes]
rs73843055	1.00[AFR][1000 genomes]
rs73843056	1.00[AFR][1000 genomes]
rs73843059	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82097600-82100600	Enhancers	NHEK	skin
2	chr3:82097800-82106400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:82098400-82101200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:82099200-82100400	Enhancers	HMEC	breast
5	chr3:82099200-82101400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:82100000-82104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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