Variant report

Variant	rs73843055
Chromosome Location	chr3:82048767-82048768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56234756	1.00[AFR][1000 genomes]
rs56265350	1.00[AFR][1000 genomes]
rs57686668	0.81[AFR][1000 genomes]
rs58147634	1.00[AFR][1000 genomes]
rs58266245	1.00[AFR][1000 genomes]
rs59072995	0.81[AFR][1000 genomes]
rs59175114	1.00[AFR][1000 genomes]
rs60361198	0.89[AFR][1000 genomes]
rs60454714	1.00[AFR][1000 genomes]
rs61368572	1.00[AFR][1000 genomes]
rs61645230	0.81[AFR][1000 genomes]
rs73841289	1.00[AFR][1000 genomes]
rs73841290	1.00[AFR][1000 genomes]
rs73841291	1.00[AFR][1000 genomes]
rs73841295	1.00[AFR][1000 genomes]
rs73841296	1.00[AFR][1000 genomes]
rs73841297	1.00[AFR][1000 genomes]
rs73841299	1.00[AFR][1000 genomes]
rs73841521	0.89[AFR][1000 genomes]
rs73841522	1.00[AFR][1000 genomes]
rs73841524	1.00[AFR][1000 genomes]
rs73841526	1.00[AFR][1000 genomes]
rs73841527	1.00[AFR][1000 genomes]
rs73841528	1.00[AFR][1000 genomes]
rs73841918	0.81[AFR][1000 genomes]
rs73841919	0.81[AFR][1000 genomes]
rs73841922	0.81[AFR][1000 genomes]
rs73843051	0.94[AFR][1000 genomes]
rs73843052	1.00[AFR][1000 genomes]
rs73843053	1.00[AFR][1000 genomes]
rs73843056	1.00[AFR][1000 genomes]
rs73843059	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82044200-82049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:82046600-82049600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:82047000-82048800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:82047200-82052800	Enhancers	Brain Germinal Matrix	brain
6	chr3:82047600-82049600	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:82047600-82050600	Weak transcription	HSMMtube	muscle
8	chr3:82047800-82049600	Weak transcription	Fetal Brain Male	brain
9	chr3:82047800-82050000	Weak transcription	Fetal Brain Female	brain
10	chr3:82048200-82049600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:82048200-82049800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:82048200-82051600	Weak transcription	Fetal Heart	heart
13	chr3:82048400-82050400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:82048400-82050800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links