Variant report

Variant	rs73841521
Chromosome Location	chr3:82023787-82023788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56234756	0.89[AFR][1000 genomes]
rs56265350	0.89[AFR][1000 genomes]
rs58147634	0.89[AFR][1000 genomes]
rs58266245	0.89[AFR][1000 genomes]
rs59175114	0.89[AFR][1000 genomes]
rs60361198	1.00[AFR][1000 genomes]
rs60454714	0.89[AFR][1000 genomes]
rs61368572	0.89[AFR][1000 genomes]
rs73841289	0.89[AFR][1000 genomes]
rs73841290	0.89[AFR][1000 genomes]
rs73841291	0.89[AFR][1000 genomes]
rs73841295	0.89[AFR][1000 genomes]
rs73841296	0.89[AFR][1000 genomes]
rs73841297	0.89[AFR][1000 genomes]
rs73841299	0.89[AFR][1000 genomes]
rs73841522	0.89[AFR][1000 genomes]
rs73841524	0.89[AFR][1000 genomes]
rs73841526	0.89[AFR][1000 genomes]
rs73841527	0.89[AFR][1000 genomes]
rs73841528	0.89[AFR][1000 genomes]
rs73843051	0.83[AFR][1000 genomes]
rs73843052	0.89[AFR][1000 genomes]
rs73843053	0.89[AFR][1000 genomes]
rs73843055	0.89[AFR][1000 genomes]
rs73843056	0.89[AFR][1000 genomes]
rs73843059	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82018200-82023800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82018400-82023800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:82023400-82024800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:82023600-82024400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:82023600-82024400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:82023600-82024400	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links