Variant report

Variant	rs57754785
Chromosome Location	chr1:63353173-63353174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10493330	0.83[AMR][1000 genomes]
rs17123998	0.83[AMR][1000 genomes]
rs57064478	0.83[AMR][1000 genomes]
rs58234250	0.83[AMR][1000 genomes]
rs58800232	0.83[AMR][1000 genomes]
rs59318206	0.83[AMR][1000 genomes]
rs59429889	0.83[AMR][1000 genomes]
rs60452972	0.83[AMR][1000 genomes]
rs60646258	0.83[AMR][1000 genomes]
rs60829308	0.83[AMR][1000 genomes]
rs60850541	0.83[AMR][1000 genomes]
rs61314361	0.83[AMR][1000 genomes]
rs6661162	0.83[AMR][1000 genomes]
rs6702884	0.83[AMR][1000 genomes]
rs72915168	0.83[AMR][1000 genomes]
rs72915179	0.83[AMR][1000 genomes]
rs72917211	0.83[AMR][1000 genomes]
rs72917229	0.83[AMR][1000 genomes]
rs72917233	0.83[AMR][1000 genomes]
rs72917235	0.83[AMR][1000 genomes]
rs72917236	0.83[AMR][1000 genomes]
rs72917258	0.83[AMR][1000 genomes]
rs72917264	1.00[AMR][1000 genomes]
rs72917293	0.92[AFR][1000 genomes]
rs72919125	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524516	0.83[AMR][1000 genomes]
rs7527194	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556456	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63350600-63357000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:63352800-63354000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:63353000-63353400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:63353000-63353400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:63353000-63353800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:63353000-63353800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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