Variant report

Variant	rs58234250
Chromosome Location	chr1:63371410-63371411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10493330	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17123998	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57064478	1.00[AMR][1000 genomes]
rs57754785	0.83[AMR][1000 genomes]
rs58248802	0.83[AMR][1000 genomes]
rs58555528	0.83[AMR][1000 genomes]
rs58800232	1.00[AMR][1000 genomes]
rs59318206	1.00[AMR][1000 genomes]
rs59429889	1.00[AMR][1000 genomes]
rs60452972	1.00[AMR][1000 genomes]
rs60646258	1.00[AMR][1000 genomes]
rs60829308	1.00[AMR][1000 genomes]
rs60850541	1.00[AMR][1000 genomes]
rs61314361	1.00[AMR][1000 genomes]
rs6661162	1.00[AMR][1000 genomes]
rs6702884	1.00[AMR][1000 genomes]
rs72915168	1.00[AMR][1000 genomes]
rs72915179	1.00[AMR][1000 genomes]
rs72915182	0.83[AMR][1000 genomes]
rs72917211	1.00[AMR][1000 genomes]
rs72917229	1.00[AMR][1000 genomes]
rs72917233	1.00[AMR][1000 genomes]
rs72917235	1.00[AMR][1000 genomes]
rs72917236	1.00[AMR][1000 genomes]
rs72917252	0.83[AMR][1000 genomes]
rs72917258	1.00[AMR][1000 genomes]
rs72917264	0.83[AMR][1000 genomes]
rs72919125	0.83[AMR][1000 genomes]
rs7524516	1.00[AMR][1000 genomes]
rs7527194	0.83[AMR][1000 genomes]
rs7556456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63369400-63371800	Enhancers	Brain Germinal Matrix	brain
2	chr1:63370800-63372200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:63371400-63372200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links