Variant report

Variant	rs72917229
Chromosome Location	chr1:63259862-63259863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:63259687..63262004-chr1:63264703..63267099,2	K562	blood:
2	chr1:63230605..63233193-chr1:63257812..63260778,2	K562	blood:
3	chr1:63248914..63253778-chr1:63255996..63260750,5	K562	blood:

Variant related genes	Relation type
ENSG00000125703	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493330	1.00[AMR][1000 genomes]
rs17123998	1.00[AMR][1000 genomes]
rs57064478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57754785	0.83[AMR][1000 genomes]
rs58234250	1.00[AMR][1000 genomes]
rs58248802	0.83[AMR][1000 genomes]
rs58555528	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58800232	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59318206	1.00[AMR][1000 genomes]
rs59429889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60452972	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60609967	0.89[AFR][1000 genomes]
rs60646258	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60829308	1.00[AMR][1000 genomes]
rs60850541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61314361	1.00[AMR][1000 genomes]
rs6661162	1.00[AMR][1000 genomes]
rs6702884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72915168	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72915179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72915182	0.83[AMR][1000 genomes]
rs72917211	1.00[AMR][1000 genomes]
rs72917233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917236	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917252	0.83[AMR][1000 genomes]
rs72917258	1.00[AMR][1000 genomes]
rs72917264	0.83[AMR][1000 genomes]
rs72919125	0.83[AMR][1000 genomes]
rs7524516	1.00[AMR][1000 genomes]
rs7527194	0.83[AMR][1000 genomes]
rs7556456	1.00[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63250600-63262400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:63250600-63266600	Weak transcription	Gastric	stomach
3	chr1:63250800-63319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:63251000-63266600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:63251000-63269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:63251000-63272600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:63251000-63274800	Weak transcription	Fetal Intestine Small	intestine
8	chr1:63251000-63296000	Weak transcription	Fetal Thymus	thymus
9	chr1:63251000-63317800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:63251000-63327400	Weak transcription	Fetal Stomach	stomach
11	chr1:63251200-63260200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:63251200-63327400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:63251400-63261200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:63251400-63264800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:63251400-63275600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr1:63251800-63260800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:63251800-63273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:63252000-63266600	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:63252000-63269600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:63252000-63284400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:63252800-63272400	Weak transcription	Primary T cells from cord blood	blood
22	chr1:63256800-63260200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr1:63257400-63293400	Weak transcription	Brain Anterior Caudate	brain
24	chr1:63258400-63261400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr1:63259000-63263200	Enhancers	Primary B cells from peripheral blood	blood
26	chr1:63259000-63263400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr1:63259000-63263600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:63259400-63262800	Enhancers	Brain Substantia Nigra	brain
29	chr1:63259600-63260000	Enhancers	Stomach Mucosa	stomach
30	chr1:63259600-63260400	Enhancers	Brain Angular Gyrus	brain
31	chr1:63259600-63261400	Enhancers	Brain Cingulate Gyrus	brain
32	chr1:63259600-63262000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:63259800-63260200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr1:63259800-63260200	Enhancers	GM12878-XiMat	blood
35	chr1:63259800-63261200	Enhancers	Brain Hippocampus Middle	brain
36	chr1:63259800-63263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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