Variant report
| Variant | rs17123998 |
|---|---|
| Chromosome Location | chr1:63371835-63371836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:63307067..63307832-chr1:63371765..63372683,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10493330 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11808188 | 1.00[CEU][hapmap] |
| rs57064478 | 1.00[AMR][1000 genomes] |
| rs57754785 | 0.83[AMR][1000 genomes] |
| rs58234250 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58248802 | 0.83[AMR][1000 genomes] |
| rs58555528 | 0.83[AMR][1000 genomes] |
| rs58800232 | 1.00[AMR][1000 genomes] |
| rs59318206 | 1.00[AMR][1000 genomes] |
| rs59429889 | 1.00[AMR][1000 genomes] |
| rs60452972 | 1.00[AMR][1000 genomes] |
| rs60646258 | 1.00[AMR][1000 genomes] |
| rs60829308 | 1.00[AMR][1000 genomes] |
| rs60850541 | 1.00[AMR][1000 genomes] |
| rs61314361 | 1.00[AMR][1000 genomes] |
| rs6661082 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs6661162 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs6661179 | 1.00[CEU][hapmap] |
| rs6702884 | 1.00[AMR][1000 genomes] |
| rs72915168 | 1.00[AMR][1000 genomes] |
| rs72915179 | 1.00[AMR][1000 genomes] |
| rs72915182 | 0.83[AMR][1000 genomes] |
| rs72917211 | 1.00[AMR][1000 genomes] |
| rs72917229 | 1.00[AMR][1000 genomes] |
| rs72917233 | 1.00[AMR][1000 genomes] |
| rs72917235 | 1.00[AMR][1000 genomes] |
| rs72917236 | 1.00[AMR][1000 genomes] |
| rs72917252 | 0.83[AMR][1000 genomes] |
| rs72917258 | 1.00[AMR][1000 genomes] |
| rs72917264 | 0.83[AMR][1000 genomes] |
| rs72919125 | 0.83[AMR][1000 genomes] |
| rs7524516 | 1.00[AMR][1000 genomes] |
| rs7527194 | 0.83[AMR][1000 genomes] |
| rs7556456 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830015 | chr1:63261143-63455296 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:63370800-63372200 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 2 | chr1:63371400-63372200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
