Variant report

Variant	rs58051327
Chromosome Location	chr6:71119323-71119324
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:71115718-71119707	K562	blood:	n/a	n/a

Variant related genes	Relation type
FAM135A	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1075263	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12528391	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16869170	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2346889	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2747702	0.81[ASN][1000 genomes]
rs3736751	0.81[ASN][1000 genomes]
rs3846750	0.81[ASN][1000 genomes]
rs3889007	0.81[ASN][1000 genomes]
rs58144467	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58377462	0.81[ASN][1000 genomes]
rs61479468	0.81[ASN][1000 genomes]
rs6922680	0.81[ASN][1000 genomes]
rs6923292	0.81[ASN][1000 genomes]
rs6932470	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6933337	0.89[AMR][1000 genomes]
rs6941205	0.81[ASN][1000 genomes]
rs73474927	0.89[AMR][1000 genomes]
rs73474934	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73474937	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73474966	0.81[ASN][1000 genomes]
rs73474967	0.81[ASN][1000 genomes]
rs73474971	0.81[ASN][1000 genomes]
rs73474974	0.81[ASN][1000 genomes]
rs7759464	0.81[ASN][1000 genomes]
rs7766075	0.81[ASN][1000 genomes]
rs7767109	0.81[ASN][1000 genomes]
rs7767149	0.81[ASN][1000 genomes]
rs7775962	0.81[ASN][1000 genomes]
rs9294868	0.81[ASN][1000 genomes]
rs9446245	0.81[ASN][1000 genomes]
rs9446248	0.81[ASN][1000 genomes]
rs9455094	0.81[ASN][1000 genomes]
rs9455100	0.81[ASN][1000 genomes]
rs9455101	0.86[ASN][1000 genomes]
rs9455104	0.81[ASN][1000 genomes]
rs9455105	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1027161	chr6:71106657-71145166	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71103600-71122400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71109800-71121400	Weak transcription	K562	blood
3	chr6:71110600-71120400	Weak transcription	Stomach Mucosa	stomach
4	chr6:71116600-71119800	Weak transcription	HepG2	liver
5	chr6:71116800-71122000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:71118800-71119600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:71119000-71120000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:71119200-71122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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