Variant report

Variant	rs9294868
Chromosome Location	chr6:71125509-71125510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:71125279-71125778	SK-N-SH	brain:	n/a	chr6:71125658-71125679
2	MAZ	chr6:71125417-71125557	GM12878	blood:	n/a	n/a
3	MAFF	chr6:71125358-71125618	K562	blood:	n/a	n/a
4	FOS	chr6:71125469-71125796	HUVEC	blood vessel:	n/a	n/a
5	FOS	chr6:71125367-71125657	MCF10A-Er-Src	breast:	n/a	n/a
6	JUND	chr6:71125370-71125697	HepG2	liver:	n/a	chr6:71125516-71125527
7	FOS	chr6:71125079-71125713	MCF10A-Er-Src	breast:	n/a	n/a
8	JUN	chr6:71125459-71125659	HepG2	liver:	n/a	n/a
9	FOS	chr6:71125359-71125703	MCF10A-Er-Src	breast:	n/a	n/a
10	GATA3	chr6:71125405-71125772	SK-N-SH	brain:	n/a	chr6:71125658-71125679
11	FOS	chr6:71125072-71125932	MCF10A-Er-Src	breast:	n/a	n/a
12	MAFK	chr6:71125371-71125654	K562	blood:	n/a	n/a
13	IRF1	chr6:71125199-71125548	K562	blood:	n/a	n/a
14	MAFK	chr6:71125386-71125662	HepG2	liver:	n/a	n/a
15	GATA3	chr6:71125431-71125726	SH-SY5Y	brain:	n/a	chr6:71125658-71125679
16	CUX1	chr6:71125467-71125680	K562	blood:	n/a	n/a
17	JUND	chr6:71125056-71125714	K562	blood:	n/a	chr6:71125516-71125527
18	MAFK	chr6:71125419-71125596	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:71125376-71125730	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71124304..71127222-chr6:71142586..71144207,2	K562	blood:

Variant related genes	Relation type
ENSG00000224349	TF binding region

Extended variants
information (count: 272 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:262)

rs_ID	r²[population]
rs10214805	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10455706	1.00[CEU][hapmap]
rs10485118	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10485119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1048886	1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap]
rs1075262	1.00[JPT][hapmap]
rs1075263	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10945230	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10945231	0.93[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap]
rs11965656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1208476	1.00[JPT][hapmap]
rs1208477	1.00[JPT][hapmap]
rs1208480	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12180997	0.85[ASN][1000 genomes]
rs12190556	0.84[JPT][hapmap]
rs12197942	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12197963	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12200777	0.93[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap]
rs12203298	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209965	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12216376	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12524814	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs12525777	0.89[EUR][1000 genomes]
rs12526164	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12526787	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs12526827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12526961	0.89[EUR][1000 genomes]
rs12527634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12528385	0.89[EUR][1000 genomes]
rs12528391	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12528866	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12529284	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12529309	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs12529984	0.87[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs12530057	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs12530358	0.89[EUR][1000 genomes]
rs13206086	1.00[JPT][hapmap]
rs16869156	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869158	0.93[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869168	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869211	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs16869221	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16869228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16869238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16869243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16869244	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16869338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16869340	0.89[ASN][1000 genomes]
rs16869353	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs16869371	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869373	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16880770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1739338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17634272	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs17634491	0.89[EUR][1000 genomes]
rs17635446	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17635510	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17706748	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs17706833	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs17713105	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs17713212	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs17713547	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs2207423	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2207425	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs2273210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293297	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2295200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2346889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2346890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2639291	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2639293	0.96[ASN][1000 genomes]
rs2639297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691486	1.00[CEU][hapmap]
rs2691496	1.00[CEU][hapmap]
rs2747702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747703	1.00[JPT][hapmap]
rs2842063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3193656	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35159719	0.84[EUR][1000 genomes]
rs3736751	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3736752	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs3846746	0.87[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846748	0.87[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41265349	0.96[EUR][1000 genomes]
rs4283855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4496758	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707802	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55761717	0.89[EUR][1000 genomes]
rs55968813	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55990553	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55990831	0.89[EUR][1000 genomes]
rs56074506	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56143128	0.83[EUR][1000 genomes]
rs56179165	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56322111	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56351105	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56397968	0.96[EUR][1000 genomes]
rs57219733	0.96[ASN][1000 genomes]
rs57343016	0.90[ASN][1000 genomes]
rs57731996	0.89[ASN][1000 genomes]
rs58051327	0.81[ASN][1000 genomes]
rs58144467	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58370765	0.89[ASN][1000 genomes]
rs58377462	1.00[ASN][1000 genomes]
rs58637377	0.89[EUR][1000 genomes]
rs58691499	0.96[ASN][1000 genomes]
rs59268472	0.96[ASN][1000 genomes]
rs59275635	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59372712	0.81[ASN][1000 genomes]
rs59635844	0.96[ASN][1000 genomes]
rs59698166	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59760243	0.89[ASN][1000 genomes]
rs61223738	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61479468	1.00[ASN][1000 genomes]
rs6455367	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6455369	0.89[ASN][1000 genomes]
rs6455370	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6455371	1.00[JPT][hapmap]
rs6900840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901904	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6902773	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6902797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6902986	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6906572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6906592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910177	0.96[ASN][1000 genomes]
rs6910903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6911812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911983	0.80[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914298	0.96[ASN][1000 genomes]
rs6915405	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6918393	0.93[CEU][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6919794	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6922680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923292	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6930397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6931901	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6932470	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6933150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6933337	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6933784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6934660	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6936018	0.96[ASN][1000 genomes]
rs6936550	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6939478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6939814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6940416	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs6941205	0.92[JPT][hapmap]
rs6941595	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6942012	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73474910	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73474927	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73474934	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73474937	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73474966	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474967	1.00[ASN][1000 genomes]
rs73474971	1.00[ASN][1000 genomes]
rs73474974	1.00[ASN][1000 genomes]
rs73474986	0.96[ASN][1000 genomes]
rs73474996	0.96[ASN][1000 genomes]
rs73474998	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73476866	0.96[ASN][1000 genomes]
rs73476886	0.96[ASN][1000 genomes]
rs73476890	0.96[ASN][1000 genomes]
rs73476892	0.96[ASN][1000 genomes]
rs73476897	0.96[ASN][1000 genomes]
rs73476899	0.94[ASN][1000 genomes]
rs73476900	0.96[ASN][1000 genomes]
rs73476902	0.96[ASN][1000 genomes]
rs73478808	0.96[ASN][1000 genomes]
rs73478819	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73480261	0.85[ASN][1000 genomes]
rs73480271	0.85[ASN][1000 genomes]
rs73480275	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73480280	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73482553	0.96[ASN][1000 genomes]
rs73482554	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73482557	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73482566	0.96[ASN][1000 genomes]
rs73482580	0.83[ASN][1000 genomes]
rs73482583	0.96[ASN][1000 genomes]
rs73482585	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73482601	0.92[ASN][1000 genomes]
rs73484507	0.92[ASN][1000 genomes]
rs73485115	0.89[ASN][1000 genomes]
rs73485116	0.89[ASN][1000 genomes]
rs73485118	0.89[ASN][1000 genomes]
rs73485126	0.89[ASN][1000 genomes]
rs73485133	0.89[ASN][1000 genomes]
rs73485137	0.89[ASN][1000 genomes]
rs73485152	0.89[ASN][1000 genomes]
rs73489063	0.89[ASN][1000 genomes]
rs73489067	0.89[ASN][1000 genomes]
rs73489091	0.89[AMR][1000 genomes]
rs73489092	0.89[ASN][1000 genomes]
rs7450771	0.83[EUR][1000 genomes]
rs7739098	0.86[JPT][hapmap]
rs7739517	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740873	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7741187	0.89[ASN][1000 genomes]
rs7741265	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs7742044	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7743819	0.87[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756774	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7757026	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7759464	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7766075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767109	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7767149	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7769582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773794	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283835	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294871	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9294876	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs9446245	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446246	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446252	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9446258	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446267	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9455092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9455093	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9455094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455097	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455100	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455101	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455114	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455130	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455133	1.00[JPT][hapmap]
rs9455139	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455140	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455144	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455150	0.93[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9455151	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs9455158	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.87[ASN][1000 genomes]
rs9455160	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs9455161	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9455162	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9455163	0.80[ASW][hapmap];0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9455167	0.82[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9455168	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1027161	chr6:71106657-71145166	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9294868	C6orf57	cis	cerebellum	SCAN
rs9294868	C10orf140	trans	cerebellum	SCAN
rs9294868	C6orf57	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71122000-71126200	Active TSS	GM12878-XiMat	blood
2	chr6:71122400-71126200	Active TSS	Fetal Intestine Small	intestine
3	chr6:71122600-71126000	Active TSS	Fetal Intestine Large	intestine
4	chr6:71124000-71157600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:71124200-71128200	Weak transcription	Gastric	stomach
6	chr6:71124200-71128200	Weak transcription	Lung	lung
7	chr6:71124200-71129800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:71124200-71133400	Weak transcription	Small Intestine	intestine
9	chr6:71124200-71136200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:71124200-71136200	Weak transcription	Pancreas	Pancrea
11	chr6:71124200-71137800	Weak transcription	HSMMtube	muscle
12	chr6:71124200-71141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:71124200-71141600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:71124200-71143800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:71124200-71154800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:71124200-71157800	Weak transcription	Spleen	Spleen
17	chr6:71124200-71159800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:71124400-71125600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:71124400-71125600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:71124400-71125600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:71124400-71127000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:71124400-71127400	Weak transcription	Placenta	Placenta
23	chr6:71124400-71128000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:71124400-71128000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:71124400-71128200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:71124400-71128200	Weak transcription	Aorta	Aorta
27	chr6:71124400-71128200	Weak transcription	Esophagus	oesophagus
28	chr6:71124400-71128200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:71124400-71128200	Weak transcription	Left Ventricle	heart
30	chr6:71124400-71131200	Weak transcription	Brain Substantia Nigra	brain
31	chr6:71124400-71136200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:71124400-71138400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:71124400-71139000	Weak transcription	Liver	Liver
34	chr6:71124400-71140400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:71124400-71143000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:71124400-71143200	Weak transcription	Psoas Muscle	Psoas
37	chr6:71124400-71148800	Weak transcription	NHLF	lung
38	chr6:71124400-71152800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:71124400-71159800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:71124400-71160400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:71124400-71192800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:71124600-71125600	Enhancers	Primary B cells from cord blood	blood
43	chr6:71124600-71125800	Active TSS	Duodenum Mucosa	Duodenum
44	chr6:71124600-71126000	Enhancers	Brain Hippocampus Middle	brain
45	chr6:71124600-71127000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:71124600-71127200	Weak transcription	Adipose Nuclei	Adipose
47	chr6:71124600-71128000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:71124600-71128200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:71124600-71128200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:71124600-71128200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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