Variant report

Variant	rs16869156
Chromosome Location	chr6:71109059-71109060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:71058776..71060420-chr6:71107055..71109479,2	K562	blood:
2	chr6:71108266..71110376-chr6:71274942..71277163,2	K562	blood:
3	chr6:71107980..71110451-chr6:71121523..71123601,2	MCF-7	breast:
4	chr6:71108477..71110953-chr6:71220565..71222587,2	K562	blood:
5	chr6:64349474..64351621-chr6:71106958..71109920,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM135A-1	chr6:71108918-71109080	XLOC_005341
2	lnc-FAM135A-1	chr6:71108918-71109120	XLOC_005341
3	lnc-FAM135A-1	chr6:71108909-71109217	NONHSAT113439

No data

Variant related genes	Relation type
ENSG00000082269	Chromatin interaction
ENSG00000154079	Chromatin interaction

Extended variants
information (count: 254 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:245)

rs_ID	r²[population]
rs10214805	0.81[CEU][hapmap]
rs10455706	0.93[CEU][hapmap]
rs10485118	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10485119	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1048886	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs1075262	1.00[JPT][hapmap]
rs1075263	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10945230	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10945231	0.86[CEU][hapmap]
rs11965656	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1208476	1.00[JPT][hapmap]
rs1208477	1.00[JPT][hapmap]
rs1208480	0.91[ASN][1000 genomes]
rs12180997	0.80[ASN][1000 genomes]
rs12190556	0.85[JPT][hapmap]
rs12197942	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12197963	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12200777	0.86[CEU][hapmap]
rs12203298	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12209965	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs12216376	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12524814	0.81[CEU][hapmap]
rs12526164	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12526787	0.81[CEU][hapmap]
rs12526827	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12527634	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12528391	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528866	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529284	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12529309	0.81[CEU][hapmap]
rs12529984	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs12530057	0.81[CEU][hapmap]
rs13206086	1.00[JPT][hapmap]
rs16869158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869168	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869170	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869211	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869221	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869228	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869238	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869243	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869244	0.92[JPT][hapmap]
rs16869267	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16869273	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869338	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869340	0.84[ASN][1000 genomes]
rs16869353	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869370	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869371	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869373	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16880770	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1739338	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17634272	0.81[CEU][hapmap]
rs17635446	0.81[CEU][hapmap]
rs17635510	0.81[CEU][hapmap]
rs17706748	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs17706833	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs17713105	0.86[CEU][hapmap]
rs17713212	0.81[CEU][hapmap]
rs17713547	0.81[CEU][hapmap]
rs2207423	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2207425	0.81[CEU][hapmap]
rs2273210	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293297	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2295200	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2346889	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2346890	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2639291	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2639293	0.91[ASN][1000 genomes]
rs2639297	0.93[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2691486	0.85[CEU][hapmap]
rs2691496	0.93[CEU][hapmap]
rs2747702	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2747703	1.00[JPT][hapmap]
rs2842063	0.93[CEU][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs3193656	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3736751	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3736752	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs3846746	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846748	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846750	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3889007	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41265349	0.85[EUR][1000 genomes]
rs4283855	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4496758	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4707802	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55968813	0.84[ASN][1000 genomes]
rs55990553	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56074506	0.84[ASN][1000 genomes]
rs56179165	0.84[ASN][1000 genomes]
rs56322111	0.84[ASN][1000 genomes]
rs56351105	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397968	0.85[EUR][1000 genomes]
rs57219733	0.91[ASN][1000 genomes]
rs57343016	0.85[ASN][1000 genomes]
rs57731996	0.84[ASN][1000 genomes]
rs58144467	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58370765	0.84[ASN][1000 genomes]
rs58377462	0.94[ASN][1000 genomes]
rs58691499	0.91[ASN][1000 genomes]
rs59268472	0.91[ASN][1000 genomes]
rs59275635	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59635844	0.91[ASN][1000 genomes]
rs59698166	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59760243	0.84[ASN][1000 genomes]
rs61223738	0.91[ASN][1000 genomes]
rs61479468	0.94[ASN][1000 genomes]
rs6455367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455369	0.84[ASN][1000 genomes]
rs6455370	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6455371	1.00[JPT][hapmap]
rs6900840	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6901904	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902773	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902797	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6902986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906572	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6906592	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6910177	0.91[ASN][1000 genomes]
rs6910903	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6911812	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911983	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6913548	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6914298	0.91[ASN][1000 genomes]
rs6915405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916974	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6917368	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6918393	0.87[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919794	0.91[ASN][1000 genomes]
rs6922680	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6923292	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926591	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6930397	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6931901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932470	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933150	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6933337	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933784	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6934660	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936018	0.91[ASN][1000 genomes]
rs6936550	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939478	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6939814	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6940416	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6941205	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs6941595	0.84[ASN][1000 genomes]
rs6942012	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs73474910	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474927	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73474934	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73474937	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73474966	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73474967	0.94[ASN][1000 genomes]
rs73474971	0.94[ASN][1000 genomes]
rs73474974	0.94[ASN][1000 genomes]
rs73474986	0.91[ASN][1000 genomes]
rs73474996	0.91[ASN][1000 genomes]
rs73474998	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73476866	0.91[ASN][1000 genomes]
rs73476886	0.91[ASN][1000 genomes]
rs73476890	0.91[ASN][1000 genomes]
rs73476892	0.91[ASN][1000 genomes]
rs73476897	0.91[ASN][1000 genomes]
rs73476899	0.89[ASN][1000 genomes]
rs73476900	0.91[ASN][1000 genomes]
rs73476902	0.91[ASN][1000 genomes]
rs73478808	0.91[ASN][1000 genomes]
rs73478819	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73480261	0.80[ASN][1000 genomes]
rs73480271	0.80[ASN][1000 genomes]
rs73482553	0.91[ASN][1000 genomes]
rs73482554	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482557	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482566	0.91[ASN][1000 genomes]
rs73482583	0.91[ASN][1000 genomes]
rs73482585	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482601	0.87[ASN][1000 genomes]
rs73484507	0.87[ASN][1000 genomes]
rs73485115	0.84[ASN][1000 genomes]
rs73485116	0.84[ASN][1000 genomes]
rs73485118	0.84[ASN][1000 genomes]
rs73485126	0.84[ASN][1000 genomes]
rs73485133	0.84[ASN][1000 genomes]
rs73485137	0.84[ASN][1000 genomes]
rs73485152	0.84[ASN][1000 genomes]
rs73489063	0.84[ASN][1000 genomes]
rs73489067	0.84[ASN][1000 genomes]
rs73489092	0.84[ASN][1000 genomes]
rs7739098	0.93[JPT][hapmap]
rs7739517	0.84[ASN][1000 genomes]
rs7740873	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7741187	0.84[ASN][1000 genomes]
rs7741265	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7742044	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7743819	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752409	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753355	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7756774	0.81[CEU][hapmap]
rs7757026	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7759464	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765110	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7766075	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767109	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7767149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7769582	0.93[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7773794	0.84[ASN][1000 genomes]
rs7775962	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9283835	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9294868	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294871	0.91[ASN][1000 genomes]
rs9294872	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294874	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9294876	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9446245	0.93[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446246	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9446248	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446252	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9446258	0.87[ASN][1000 genomes]
rs9446267	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9455092	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs9455093	0.81[EUR][1000 genomes]
rs9455094	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455097	0.88[CEU][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455100	0.94[ASN][1000 genomes]
rs9455101	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455104	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455105	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455113	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455114	0.91[ASN][1000 genomes]
rs9455121	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455130	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455132	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9455133	1.00[JPT][hapmap]
rs9455139	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9455140	0.84[ASN][1000 genomes]
rs9455144	0.84[ASN][1000 genomes]
rs9455150	0.86[CEU][hapmap]
rs9455151	0.81[CEU][hapmap]
rs9455158	0.86[CEU][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9455160	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9455161	0.82[ASN][1000 genomes]
rs9455162	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs9455163	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs9455167	0.91[JPT][hapmap]
rs9455168	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1027161	chr6:71106657-71145166	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71103600-71122400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71106600-71109600	Enhancers	HUVEC	blood vessel
3	chr6:71106800-71109600	Flanking Active TSS	NHEK	skin
4	chr6:71107000-71109200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:71107400-71109200	Weak transcription	Placenta	Placenta
6	chr6:71107400-71109600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr6:71107800-71109400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:71108000-71109200	Weak transcription	Stomach Mucosa	stomach
9	chr6:71108000-71109600	Active TSS	A549	lung
10	chr6:71108400-71109200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:71108400-71109400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:71108400-71109400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:71108400-71109400	Transcr. at gene 5' and 3'	K562	blood
14	chr6:71108400-71109600	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr6:71108600-71109200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:71108600-71109400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:71108600-71109400	Flanking Active TSS	Hela-S3	cervix
18	chr6:71108600-71109400	Enhancers	HSMM	muscle
19	chr6:71108600-71109400	Enhancers	HSMMtube	muscle
20	chr6:71108600-71109400	Enhancers	Osteobl	bone
21	chr6:71108800-71109200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:71108800-71109200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:71108800-71109200	Flanking Active TSS	Fetal Kidney	kidney
24	chr6:71108800-71109200	Active TSS	HepG2	liver
25	chr6:71108800-71109400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:71108800-71109400	Enhancers	NH-A	brain
27	chr6:71109000-71109200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:71109000-71109200	Flanking Active TSS	Liver	Liver
29	chr6:71109000-71109200	Active TSS	Fetal Intestine Small	intestine
30	chr6:71109000-71109400	Flanking Active TSS	Fetal Intestine Large	intestine
31	chr6:71109000-71109400	Bivalent/Poised TSS	NHDF-Ad	bronchial
32	chr6:71109000-71109600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:71109000-71109600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr6:71109000-71109600	Flanking Active TSS	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links