Variant report

Variant	rs6936550
Chromosome Location	chr6:71104670-71104671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:71103256..71105709-chr6:71376472..71378763,2	K562	blood:
2	chr6:70931634..70934194-chr6:71104182..71105989,2	K562	blood:
3	chr6:71104620..71107220-chr6:71165268..71168760,3	K562	blood:
4	chr6:70991053..70993906-chr6:71103584..71105214,3	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM135A-1	chr6:71104617-71104746	XLOC_005341
2	lnc-FAM135A-1	chr6:71104590-71104746	XLOC_005341
3	lnc-FAM135A-1	chr6:71104613-71104746	XLOC_005341
4	lnc-FAM135A-1	chr6:71104207-71104746	NONHSAT113439

No data

Variant related genes	Relation type
ENSG00000112280	Chromatin interaction
ENSG00000253809	Chromatin interaction
ENSG00000112305	Chromatin interaction

Extended variants
information (count: 209 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10485118	0.91[ASN][1000 genomes]
rs10485119	0.84[ASN][1000 genomes]
rs1075263	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11965656	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1208480	0.91[ASN][1000 genomes]
rs12180997	0.80[ASN][1000 genomes]
rs12526164	0.84[ASN][1000 genomes]
rs12526827	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12527634	0.84[ASN][1000 genomes]
rs12528391	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528866	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529284	0.80[ASN][1000 genomes]
rs12529984	0.92[EUR][1000 genomes]
rs16869156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869158	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869168	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869170	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869211	0.84[ASN][1000 genomes]
rs16869221	0.91[ASN][1000 genomes]
rs16869228	0.91[ASN][1000 genomes]
rs16869238	0.91[ASN][1000 genomes]
rs16869243	0.91[ASN][1000 genomes]
rs16869267	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16869273	0.91[ASN][1000 genomes]
rs16869338	0.84[ASN][1000 genomes]
rs16869340	0.84[ASN][1000 genomes]
rs16869353	0.84[ASN][1000 genomes]
rs16869370	0.84[ASN][1000 genomes]
rs16869371	0.84[ASN][1000 genomes]
rs16869373	0.84[ASN][1000 genomes]
rs16880770	0.84[ASN][1000 genomes]
rs1739338	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17706748	0.85[EUR][1000 genomes]
rs17706833	0.81[EUR][1000 genomes]
rs2207423	0.84[ASN][1000 genomes]
rs2273210	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293297	0.82[ASN][1000 genomes]
rs2295200	0.84[ASN][1000 genomes]
rs2346889	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2346890	0.87[ASN][1000 genomes]
rs2639291	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2639293	0.91[ASN][1000 genomes]
rs2639297	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2747702	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2842063	0.84[ASN][1000 genomes]
rs3193656	0.84[ASN][1000 genomes]
rs3736751	0.94[ASN][1000 genomes]
rs3736752	0.91[ASN][1000 genomes]
rs3846746	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846748	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846750	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3889007	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41265349	0.85[EUR][1000 genomes]
rs4283855	0.84[ASN][1000 genomes]
rs4496758	0.84[ASN][1000 genomes]
rs4707802	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55968813	0.84[ASN][1000 genomes]
rs55990553	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56074506	0.84[ASN][1000 genomes]
rs56179165	0.84[ASN][1000 genomes]
rs56322111	0.84[ASN][1000 genomes]
rs56351105	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397968	0.85[EUR][1000 genomes]
rs57219733	0.91[ASN][1000 genomes]
rs57343016	0.85[ASN][1000 genomes]
rs57731996	0.84[ASN][1000 genomes]
rs58144467	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58370765	0.84[ASN][1000 genomes]
rs58377462	0.94[ASN][1000 genomes]
rs58691499	0.91[ASN][1000 genomes]
rs59268472	0.91[ASN][1000 genomes]
rs59275635	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59635844	0.91[ASN][1000 genomes]
rs59698166	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59760243	0.84[ASN][1000 genomes]
rs61223738	0.91[ASN][1000 genomes]
rs61479468	0.94[ASN][1000 genomes]
rs6455367	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455369	0.84[ASN][1000 genomes]
rs6455370	0.84[ASN][1000 genomes]
rs6900840	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6901904	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902773	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902797	0.91[ASN][1000 genomes]
rs6902986	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906572	0.91[ASN][1000 genomes]
rs6906592	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6910177	0.91[ASN][1000 genomes]
rs6910903	0.84[ASN][1000 genomes]
rs6911812	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911983	0.84[ASN][1000 genomes]
rs6913548	0.84[ASN][1000 genomes]
rs6914298	0.91[ASN][1000 genomes]
rs6915405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916974	0.84[ASN][1000 genomes]
rs6917368	0.89[ASN][1000 genomes]
rs6918393	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919794	0.91[ASN][1000 genomes]
rs6922680	0.94[ASN][1000 genomes]
rs6923292	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926591	0.91[ASN][1000 genomes]
rs6930397	0.91[ASN][1000 genomes]
rs6931901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932470	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933150	0.84[ASN][1000 genomes]
rs6933337	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933784	0.91[ASN][1000 genomes]
rs6934660	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936018	0.91[ASN][1000 genomes]
rs6939478	0.84[ASN][1000 genomes]
rs6939814	0.84[ASN][1000 genomes]
rs6940416	0.84[ASN][1000 genomes]
rs6941205	0.85[ASN][1000 genomes]
rs6941595	0.84[ASN][1000 genomes]
rs6942012	0.84[ASN][1000 genomes]
rs73474910	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474927	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73474934	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73474937	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73474966	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73474967	0.94[ASN][1000 genomes]
rs73474971	0.94[ASN][1000 genomes]
rs73474974	0.94[ASN][1000 genomes]
rs73474986	0.91[ASN][1000 genomes]
rs73474996	0.91[ASN][1000 genomes]
rs73474998	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73476866	0.91[ASN][1000 genomes]
rs73476886	0.91[ASN][1000 genomes]
rs73476890	0.91[ASN][1000 genomes]
rs73476892	0.91[ASN][1000 genomes]
rs73476897	0.91[ASN][1000 genomes]
rs73476899	0.89[ASN][1000 genomes]
rs73476900	0.91[ASN][1000 genomes]
rs73476902	0.91[ASN][1000 genomes]
rs73478808	0.91[ASN][1000 genomes]
rs73478819	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73480261	0.80[ASN][1000 genomes]
rs73480271	0.80[ASN][1000 genomes]
rs73482553	0.91[ASN][1000 genomes]
rs73482554	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482557	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482566	0.91[ASN][1000 genomes]
rs73482583	0.91[ASN][1000 genomes]
rs73482585	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73482601	0.87[ASN][1000 genomes]
rs73484507	0.87[ASN][1000 genomes]
rs73485115	0.84[ASN][1000 genomes]
rs73485116	0.84[ASN][1000 genomes]
rs73485118	0.84[ASN][1000 genomes]
rs73485126	0.84[ASN][1000 genomes]
rs73485133	0.84[ASN][1000 genomes]
rs73485137	0.84[ASN][1000 genomes]
rs73485152	0.84[ASN][1000 genomes]
rs73489063	0.84[ASN][1000 genomes]
rs73489067	0.84[ASN][1000 genomes]
rs73489092	0.84[ASN][1000 genomes]
rs7739517	0.84[ASN][1000 genomes]
rs7740873	0.84[ASN][1000 genomes]
rs7741187	0.84[ASN][1000 genomes]
rs7742044	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7743819	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752409	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753355	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759464	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765110	0.91[ASN][1000 genomes]
rs7766075	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767109	0.94[ASN][1000 genomes]
rs7767149	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7769582	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7773794	0.84[ASN][1000 genomes]
rs7775962	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9283835	0.84[ASN][1000 genomes]
rs9294868	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294871	0.91[ASN][1000 genomes]
rs9294872	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294874	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9294876	0.84[ASN][1000 genomes]
rs9446245	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446246	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9446248	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446252	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9446258	0.87[ASN][1000 genomes]
rs9446267	0.80[ASN][1000 genomes]
rs9455093	0.81[EUR][1000 genomes]
rs9455094	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455097	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455100	0.94[ASN][1000 genomes]
rs9455101	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455104	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455105	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455113	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455114	0.91[ASN][1000 genomes]
rs9455121	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455130	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455132	0.87[ASN][1000 genomes]
rs9455139	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9455140	0.84[ASN][1000 genomes]
rs9455144	0.84[ASN][1000 genomes]
rs9455158	0.82[ASN][1000 genomes]
rs9455160	0.84[ASN][1000 genomes]
rs9455161	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71097600-71108000	Enhancers	Fetal Intestine Large	intestine
2	chr6:71099400-71108400	Enhancers	Fetal Intestine Small	intestine
3	chr6:71099800-71104800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:71100400-71105800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:71100400-71105800	Weak transcription	A549	lung
6	chr6:71102000-71105800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:71102200-71105000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:71103600-71122400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:71104200-71104800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:71104200-71104800	Enhancers	Colonic Mucosa	Colon
11	chr6:71104200-71104800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:71104200-71104800	Enhancers	Small Intestine	intestine
13	chr6:71104200-71105000	Enhancers	HepG2	liver
14	chr6:71104200-71105800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:71104200-71107200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:71104200-71108000	Enhancers	Stomach Mucosa	stomach
17	chr6:71104400-71104800	Enhancers	Esophagus	oesophagus
18	chr6:71104400-71104800	Enhancers	Placenta	Placenta
19	chr6:71104400-71104800	Flanking Active TSS	Pancreas	Pancrea
20	chr6:71104400-71107200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:71104400-71108200	Active TSS	K562	blood
22	chr6:71104600-71104800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:71104600-71106200	Weak transcription	Placenta Amnion	Placenta Amnion

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