Variant report

Variant	rs16880770
Chromosome Location	chr6:71256722-71256723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:71228771..71231572-chr6:71254791..71257438,2	K562	blood:
2	chr6:71255696..71258103-chr6:71275754..71278045,2	MCF-7	breast:
3	chr6:71256654..71257504-chr6:71593787..71594712,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154079	Chromatin interaction

Extended variants
information (count: 241 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10485118	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10485119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048886	0.92[JPT][hapmap]
rs1075262	1.00[JPT][hapmap]
rs1075263	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10945230	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11965656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1208476	1.00[JPT][hapmap]
rs1208477	1.00[JPT][hapmap]
rs1208480	0.92[ASN][1000 genomes]
rs12180997	0.96[ASN][1000 genomes]
rs12190556	0.85[JPT][hapmap]
rs12197942	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12197963	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12203298	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12209965	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12216376	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12526164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12526827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12527634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12528391	0.85[ASN][1000 genomes]
rs12528866	0.92[ASN][1000 genomes]
rs12529284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13206086	1.00[JPT][hapmap]
rs16869156	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869158	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16869168	0.87[ASN][1000 genomes]
rs16869170	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16869211	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16869221	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869228	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869238	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869244	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16869267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16869273	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869340	1.00[ASN][1000 genomes]
rs16869353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs16869370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869373	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1739338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2207423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2273210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2293297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2295200	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2346889	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2346890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2639291	0.92[ASN][1000 genomes]
rs2639293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2639297	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2691493	0.85[ASN][1000 genomes]
rs2691495	0.85[ASN][1000 genomes]
rs2747702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2747703	1.00[JPT][hapmap]
rs2842063	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs3193656	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3736751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3736752	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3763252	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3846746	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs3846748	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3846750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3889007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4283855	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4496758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4707802	0.82[ASN][1000 genomes]
rs55968813	1.00[ASN][1000 genomes]
rs55990553	0.92[ASN][1000 genomes]
rs56074506	1.00[ASN][1000 genomes]
rs56179165	1.00[ASN][1000 genomes]
rs56322111	1.00[ASN][1000 genomes]
rs56351105	0.84[ASN][1000 genomes]
rs57219733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57343016	1.00[AMR][1000 genomes]
rs57435529	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57563851	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57731996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58144467	0.85[ASN][1000 genomes]
rs58370765	1.00[ASN][1000 genomes]
rs58377462	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58691499	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59268472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59275635	0.92[ASN][1000 genomes]
rs59372712	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59635844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59698166	0.92[ASN][1000 genomes]
rs59760243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61223738	0.92[ASN][1000 genomes]
rs61479468	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6455367	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6455369	1.00[ASN][1000 genomes]
rs6455370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6455371	1.00[JPT][hapmap]
rs6900840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6901904	0.92[ASN][1000 genomes]
rs6902773	0.81[ASN][1000 genomes]
rs6902797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6902986	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6906572	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6906592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6910177	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6910903	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6911812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6911983	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6913548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6914298	0.92[ASN][1000 genomes]
rs6915405	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6916974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6917368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6918393	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6919794	0.92[ASN][1000 genomes]
rs6920515	0.85[ASN][1000 genomes]
rs6922680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6923292	0.85[ASN][1000 genomes]
rs6926591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6930397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6931901	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6932470	0.85[ASN][1000 genomes]
rs6933150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6933784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6934660	0.84[ASN][1000 genomes]
rs6936018	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6936550	0.84[ASN][1000 genomes]
rs6939478	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939814	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940416	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6941205	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs6941595	1.00[ASN][1000 genomes]
rs6942012	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73474910	0.84[ASN][1000 genomes]
rs73474927	0.87[ASN][1000 genomes]
rs73474934	0.85[ASN][1000 genomes]
rs73474937	0.85[ASN][1000 genomes]
rs73474966	0.89[ASN][1000 genomes]
rs73474967	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73474971	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73474974	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73474986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73474996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73474998	0.92[ASN][1000 genomes]
rs73476866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73476886	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73476890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73476892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73476897	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73476899	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73476900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73476902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73478808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73478819	0.92[ASN][1000 genomes]
rs73480261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73480271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73480275	0.89[ASN][1000 genomes]
rs73480280	0.89[ASN][1000 genomes]
rs73482553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73482554	0.92[ASN][1000 genomes]
rs73482557	0.92[ASN][1000 genomes]
rs73482566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73482580	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73482585	0.92[ASN][1000 genomes]
rs73482601	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73484507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73485115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485116	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485118	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485126	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485137	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73489063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73489067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73489091	0.81[ASN][1000 genomes]
rs73489092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490322	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73490323	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73490338	0.84[ASN][1000 genomes]
rs7739098	0.86[JPT][hapmap]
rs7739517	1.00[ASN][1000 genomes]
rs7740873	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7741187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741265	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7742044	0.85[ASN][1000 genomes]
rs7743819	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7752409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7753355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7756774	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7757026	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7759464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7765110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7766075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7767109	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7767149	0.85[ASN][1000 genomes]
rs7769582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7773794	1.00[ASN][1000 genomes]
rs7775962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9283835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9294868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9294871	0.92[ASN][1000 genomes]
rs9294872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9294874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9294876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9446245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9446246	0.83[ASN][1000 genomes]
rs9446248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9446252	0.92[ASN][1000 genomes]
rs9446258	0.96[ASN][1000 genomes]
rs9446267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9455092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9455094	0.89[ASN][1000 genomes]
rs9455097	0.85[ASN][1000 genomes]
rs9455100	0.89[ASN][1000 genomes]
rs9455101	0.83[ASN][1000 genomes]
rs9455104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9455105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9455113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9455114	0.92[ASN][1000 genomes]
rs9455121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9455130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9455132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9455133	1.00[JPT][hapmap]
rs9455139	1.00[ASN][1000 genomes]
rs9455140	1.00[ASN][1000 genomes]
rs9455144	1.00[ASN][1000 genomes]
rs9455158	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs9455160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9455161	0.98[ASN][1000 genomes]
rs9455162	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9455163	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9455167	0.82[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455168	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9455176	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9455178	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71210600-71262000	Weak transcription	Fetal Thymus	thymus
2	chr6:71214000-71276000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:71214000-71276000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:71214000-71276000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:71214400-71257000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:71214400-71262000	Weak transcription	Psoas Muscle	Psoas
7	chr6:71214600-71276000	Weak transcription	A549	lung
8	chr6:71215000-71273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:71216200-71262200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:71219000-71258800	Weak transcription	Small Intestine	intestine
11	chr6:71228600-71276000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:71229600-71276200	Weak transcription	Aorta	Aorta
13	chr6:71231200-71268000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:71231800-71257200	Weak transcription	Fetal Heart	heart
15	chr6:71233400-71256800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:71235600-71258200	Weak transcription	Liver	Liver
17	chr6:71236400-71273200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:71237000-71276200	Weak transcription	Left Ventricle	heart
19	chr6:71237600-71257400	Weak transcription	Osteobl	bone
20	chr6:71241600-71257400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:71242800-71257400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:71243400-71276200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:71243600-71259800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:71245400-71257200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:71245400-71258800	Weak transcription	Lung	lung
26	chr6:71245400-71261400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:71245400-71270600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:71245400-71276400	Weak transcription	Esophagus	oesophagus
29	chr6:71245400-71276400	Weak transcription	Gastric	stomach
30	chr6:71245600-71276200	Weak transcription	Primary B cells from cord blood	blood
31	chr6:71247600-71257400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:71249000-71257400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:71249200-71258400	Weak transcription	NHEK	skin
34	chr6:71249200-71268200	Weak transcription	Fetal Lung	lung
35	chr6:71249200-71273000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:71249200-71275800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:71249400-71266800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:71249400-71276200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:71249800-71276200	Weak transcription	Fetal Brain Female	brain
40	chr6:71250000-71273400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:71250000-71274600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:71250000-71276000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:71250000-71276000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:71250400-71276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:71250600-71276000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:71250600-71276000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:71250600-71276200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:71251800-71267400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:71251800-71276200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:71252000-71259600	Weak transcription	Primary hematopoietic stem cells	blood

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