Variant report

Variant	rs9455178
Chromosome Location	chr6:71302114-71302115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71295996..71298551-chr6:71301722..71304064,2	MCF-7	breast:
2	chr6:71300001..71302323-chr6:71529917..71532229,2	K562	blood:

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10485118	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485119	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1048886	0.83[ASN][1000 genomes]
rs10945230	0.83[ASN][1000 genomes]
rs11965656	1.00[CHB][hapmap]
rs12180997	0.82[ASN][1000 genomes]
rs12197942	0.83[ASN][1000 genomes]
rs12197963	0.83[ASN][1000 genomes]
rs12203298	0.83[ASN][1000 genomes]
rs12209965	0.83[ASN][1000 genomes]
rs12216376	0.83[ASN][1000 genomes]
rs12526164	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12526827	1.00[CHB][hapmap]
rs12527634	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12529284	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs16869211	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16869221	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs16869228	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs16869238	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs16869243	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs16869244	1.00[CHB][hapmap]
rs16869267	1.00[CHB][hapmap]
rs16869273	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs16869338	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869340	0.86[ASN][1000 genomes]
rs16869353	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16869370	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16869371	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16869373	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16880770	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1739338	1.00[CHB][hapmap]
rs2207423	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2273210	1.00[CHB][hapmap]
rs2293297	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2295200	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2346890	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2639293	0.83[AMR][1000 genomes]
rs2639297	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2691493	0.88[ASN][1000 genomes]
rs2691495	0.88[ASN][1000 genomes]
rs2747702	1.00[CHB][hapmap]
rs2842063	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2842076	0.88[ASN][1000 genomes]
rs3193656	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3736751	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs3736752	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs3763252	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846750	1.00[CHB][hapmap]
rs3889007	1.00[CHB][hapmap]
rs4283855	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4496758	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs55968813	0.86[ASN][1000 genomes]
rs56074506	0.86[ASN][1000 genomes]
rs56179165	0.86[ASN][1000 genomes]
rs56322111	0.86[ASN][1000 genomes]
rs57219733	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57343016	0.83[AMR][1000 genomes]
rs57435529	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57563851	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57731996	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58370765	0.86[ASN][1000 genomes]
rs58377462	0.83[AMR][1000 genomes]
rs58691499	0.83[AMR][1000 genomes]
rs59268472	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59372712	1.00[EUR][1000 genomes]
rs59635844	0.83[AMR][1000 genomes]
rs59760243	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61479468	0.83[AMR][1000 genomes]
rs6455369	0.86[ASN][1000 genomes]
rs6455370	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6900840	1.00[CHB][hapmap]
rs6902797	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6906572	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6906592	1.00[CHB][hapmap]
rs6910903	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6911812	1.00[CHB][hapmap]
rs6911983	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6913548	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6916974	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6917368	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6920515	0.88[ASN][1000 genomes]
rs6922680	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926591	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6930397	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6933150	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6933784	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs6936018	0.83[AMR][1000 genomes]
rs6939478	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939814	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6940416	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6941205	1.00[EUR][1000 genomes]
rs6941595	0.86[ASN][1000 genomes]
rs6942012	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs73474967	0.83[AMR][1000 genomes]
rs73474971	0.83[AMR][1000 genomes]
rs73474974	0.83[AMR][1000 genomes]
rs73474986	0.83[AMR][1000 genomes]
rs73474996	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476866	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476886	0.83[AMR][1000 genomes]
rs73476890	0.83[AMR][1000 genomes]
rs73476892	0.83[AMR][1000 genomes]
rs73476897	0.83[AMR][1000 genomes]
rs73476899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476900	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476902	0.83[AMR][1000 genomes]
rs73478808	0.83[AMR][1000 genomes]
rs73480261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73480271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73480275	0.83[ASN][1000 genomes]
rs73480280	0.83[ASN][1000 genomes]
rs73482553	0.83[AMR][1000 genomes]
rs73482566	0.83[AMR][1000 genomes]
rs73482580	0.83[AMR][1000 genomes]
rs73482583	0.83[AMR][1000 genomes]
rs73482601	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73484507	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73485115	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485116	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485118	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485126	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485133	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485137	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485152	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489063	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489067	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489092	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73490322	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490338	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7739517	0.86[ASN][1000 genomes]
rs7740873	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7741187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741265	0.88[ASN][1000 genomes]
rs7752409	1.00[CHB][hapmap]
rs7753355	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7756774	1.00[CHB][hapmap]
rs7757026	0.83[ASN][1000 genomes]
rs7759464	1.00[CHB][hapmap]
rs7765110	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7766075	1.00[CHB][hapmap]
rs7767109	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7769582	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7773794	0.86[ASN][1000 genomes]
rs7775962	1.00[CHB][hapmap]
rs9283835	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9294868	1.00[CHB][hapmap]
rs9294872	1.00[CHB][hapmap]
rs9294874	1.00[CHB][hapmap]
rs9294876	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9446245	1.00[CHB][hapmap]
rs9446248	1.00[CHB][hapmap]
rs9446258	0.82[ASN][1000 genomes]
rs9446267	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9455092	1.00[CHB][hapmap]
rs9455104	1.00[CHB][hapmap]
rs9455105	1.00[CHB][hapmap]
rs9455113	1.00[CHB][hapmap]
rs9455121	1.00[CHB][hapmap]
rs9455130	1.00[CHB][hapmap]
rs9455132	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9455139	0.86[ASN][1000 genomes]
rs9455140	0.86[ASN][1000 genomes]
rs9455144	0.86[ASN][1000 genomes]
rs9455158	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9455160	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9455161	0.87[ASN][1000 genomes]
rs9455162	0.83[ASN][1000 genomes]
rs9455163	0.83[ASN][1000 genomes]
rs9455167	0.82[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455168	0.88[ASN][1000 genomes]
rs9455176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455177	0.86[ASN][1000 genomes]
rs9455182	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71277200-71303200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:71277200-71310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:71277400-71302200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:71277400-71302800	Weak transcription	Thymus	Thymus
5	chr6:71278000-71305200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:71278200-71308800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:71278600-71308800	Weak transcription	Dnd41	blood
8	chr6:71286000-71303200	Weak transcription	Psoas Muscle	Psoas
9	chr6:71286000-71304800	Weak transcription	Gastric	stomach
10	chr6:71286200-71310600	Weak transcription	Right Ventricle	heart
11	chr6:71288400-71309800	Weak transcription	Spleen	Spleen
12	chr6:71289400-71302600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:71289800-71310200	Weak transcription	Colonic Mucosa	Colon
14	chr6:71291400-71307800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:71291600-71304800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:71291600-71310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:71291800-71302200	Weak transcription	Osteobl	bone
18	chr6:71291800-71302800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:71292000-71302800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:71292400-71302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:71292400-71304600	Weak transcription	Brain Germinal Matrix	brain
22	chr6:71292600-71305800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:71292600-71310000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:71293000-71302200	Weak transcription	Fetal Lung	lung
25	chr6:71293800-71302600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:71295000-71304400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:71295400-71302200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:71295400-71302400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:71295400-71305000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:71295400-71308800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:71295400-71314000	Weak transcription	Aorta	Aorta
32	chr6:71295800-71306200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:71295800-71307200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:71295800-71309000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:71296000-71302200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:71296000-71302400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:71296000-71303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:71296000-71303200	Weak transcription	Fetal Brain Female	brain
39	chr6:71296200-71303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:71296200-71303800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:71296200-71304400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:71296200-71310600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:71296400-71302200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:71296400-71302200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:71296400-71302600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:71297600-71303400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:71297800-71303000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:71297800-71303200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:71298000-71304400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:71298000-71310800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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