Variant report

Variant	rs73490322
Chromosome Location	chr6:71308818-71308819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71304523..71307209-chr6:71308818..71310942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271967	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10485118	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10485119	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1048886	0.83[ASN][1000 genomes]
rs10945230	0.83[ASN][1000 genomes]
rs12180997	0.82[ASN][1000 genomes]
rs12197942	0.83[ASN][1000 genomes]
rs12197963	0.83[ASN][1000 genomes]
rs12203298	0.83[ASN][1000 genomes]
rs12209965	0.83[ASN][1000 genomes]
rs12216376	0.83[ASN][1000 genomes]
rs12526164	0.86[ASN][1000 genomes]
rs12527634	0.86[ASN][1000 genomes]
rs12529284	0.82[ASN][1000 genomes]
rs16869211	1.00[EUR][1000 genomes]
rs16869221	0.89[AMR][1000 genomes]
rs16869228	0.89[AMR][1000 genomes]
rs16869238	0.89[AMR][1000 genomes]
rs16869243	0.89[AMR][1000 genomes]
rs16869273	0.89[AMR][1000 genomes]
rs16869338	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869340	0.86[ASN][1000 genomes]
rs16869353	0.86[ASN][1000 genomes]
rs16869370	0.86[ASN][1000 genomes]
rs16869371	0.86[ASN][1000 genomes]
rs16869373	0.86[ASN][1000 genomes]
rs16880770	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2207423	0.86[ASN][1000 genomes]
rs2293297	0.87[ASN][1000 genomes]
rs2295200	0.86[ASN][1000 genomes]
rs2346890	0.82[ASN][1000 genomes]
rs2639293	0.89[AMR][1000 genomes]
rs2639297	0.86[ASN][1000 genomes]
rs2691493	0.88[ASN][1000 genomes]
rs2691495	0.88[ASN][1000 genomes]
rs2842063	0.86[ASN][1000 genomes]
rs2842076	0.88[ASN][1000 genomes]
rs3193656	0.86[ASN][1000 genomes]
rs3736751	0.89[AMR][1000 genomes]
rs3736752	0.89[AMR][1000 genomes]
rs3763252	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4283855	0.86[ASN][1000 genomes]
rs4496758	0.86[ASN][1000 genomes]
rs55968813	0.86[ASN][1000 genomes]
rs56074506	0.86[ASN][1000 genomes]
rs56179165	0.86[ASN][1000 genomes]
rs56322111	0.86[ASN][1000 genomes]
rs57219733	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57343016	0.89[AMR][1000 genomes]
rs57435529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57563851	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57731996	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58370765	0.86[ASN][1000 genomes]
rs58377462	0.89[AMR][1000 genomes]
rs58691499	0.89[AMR][1000 genomes]
rs59268472	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59372712	1.00[EUR][1000 genomes]
rs59635844	0.89[AMR][1000 genomes]
rs59760243	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61479468	0.89[AMR][1000 genomes]
rs6455369	0.86[ASN][1000 genomes]
rs6455370	0.86[ASN][1000 genomes]
rs6902797	0.89[AMR][1000 genomes]
rs6906572	0.89[AMR][1000 genomes]
rs6910903	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6911983	0.86[ASN][1000 genomes]
rs6913548	0.86[ASN][1000 genomes]
rs6916974	0.86[ASN][1000 genomes]
rs6917368	0.89[AMR][1000 genomes]
rs6920515	0.88[ASN][1000 genomes]
rs6922680	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926591	0.89[AMR][1000 genomes]
rs6930397	0.89[AMR][1000 genomes]
rs6933150	0.86[ASN][1000 genomes]
rs6933784	0.89[AMR][1000 genomes]
rs6936018	0.89[AMR][1000 genomes]
rs6939478	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939814	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6940416	0.86[ASN][1000 genomes]
rs6941205	1.00[EUR][1000 genomes]
rs6941595	0.86[ASN][1000 genomes]
rs6942012	0.86[ASN][1000 genomes]
rs73474967	0.89[AMR][1000 genomes]
rs73474971	0.89[AMR][1000 genomes]
rs73474974	0.89[AMR][1000 genomes]
rs73474986	0.89[AMR][1000 genomes]
rs73474996	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476866	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476886	0.89[AMR][1000 genomes]
rs73476890	0.89[AMR][1000 genomes]
rs73476892	0.89[AMR][1000 genomes]
rs73476897	0.89[AMR][1000 genomes]
rs73476899	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476900	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73476902	0.89[AMR][1000 genomes]
rs73478808	0.89[AMR][1000 genomes]
rs73480261	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73480271	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73480275	0.83[ASN][1000 genomes]
rs73480280	0.83[ASN][1000 genomes]
rs73482553	0.89[AMR][1000 genomes]
rs73482566	0.89[AMR][1000 genomes]
rs73482580	0.89[AMR][1000 genomes]
rs73482583	0.89[AMR][1000 genomes]
rs73482601	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73484507	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73485115	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485116	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485118	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485126	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485133	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485137	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73485152	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489063	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489067	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73489092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73490323	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490338	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7739517	0.86[ASN][1000 genomes]
rs7740873	0.86[ASN][1000 genomes]
rs7741187	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741265	0.88[ASN][1000 genomes]
rs7753355	0.82[ASN][1000 genomes]
rs7757026	0.83[ASN][1000 genomes]
rs7765110	0.89[AMR][1000 genomes]
rs7767109	0.89[AMR][1000 genomes]
rs7769582	0.86[ASN][1000 genomes]
rs7773794	0.86[ASN][1000 genomes]
rs9283835	0.86[ASN][1000 genomes]
rs9294876	0.86[ASN][1000 genomes]
rs9446258	0.82[ASN][1000 genomes]
rs9446267	0.86[ASN][1000 genomes]
rs9455132	0.82[ASN][1000 genomes]
rs9455139	0.86[ASN][1000 genomes]
rs9455140	0.86[ASN][1000 genomes]
rs9455144	0.86[ASN][1000 genomes]
rs9455158	0.84[ASN][1000 genomes]
rs9455160	0.86[ASN][1000 genomes]
rs9455161	0.87[ASN][1000 genomes]
rs9455162	0.83[ASN][1000 genomes]
rs9455163	0.83[ASN][1000 genomes]
rs9455167	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455168	0.88[ASN][1000 genomes]
rs9455176	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455177	0.86[ASN][1000 genomes]
rs9455178	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455182	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71277200-71310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:71286200-71310600	Weak transcription	Right Ventricle	heart
3	chr6:71288400-71309800	Weak transcription	Spleen	Spleen
4	chr6:71289800-71310200	Weak transcription	Colonic Mucosa	Colon
5	chr6:71291600-71310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:71292600-71310000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:71295400-71314000	Weak transcription	Aorta	Aorta
8	chr6:71295800-71309000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:71296200-71310600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:71298000-71310800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:71300800-71310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:71301000-71309600	Weak transcription	Ovary	ovary
13	chr6:71301000-71310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:71301200-71309800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:71308800-71309200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:71308800-71309200	Enhancers	Dnd41	blood
17	chr6:71308800-71309400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:71308800-71309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:71308800-71309600	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links