Variant report

Variant	rs12216376
Chromosome Location	chr6:71278224-71278225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71278183..71281397-chr6:71376179..71379100,4	MCF-7	breast:
2	chr6:71276734..71278615-chr6:71284876..71287585,2	K562	blood:

Variant related genes	Relation type
ENSG00000112305	Chromatin interaction

Extended variants
information (count: 277 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:270)

rs_ID	r²[population]
rs10214805	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10455706	0.93[CEU][hapmap];0.87[GIH][hapmap];0.85[EUR][1000 genomes]
rs10485118	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10485119	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1048886	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1075262	1.00[JPT][hapmap]
rs1075263	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10945230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945231	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs10945235	0.84[EUR][1000 genomes]
rs11965656	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208476	1.00[JPT][hapmap]
rs1208477	1.00[JPT][hapmap]
rs1208480	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12180997	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190556	0.84[JPT][hapmap]
rs12191321	0.88[EUR][1000 genomes]
rs12197942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200777	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs12201029	0.89[EUR][1000 genomes]
rs12203089	0.90[EUR][1000 genomes]
rs12203298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524814	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12525538	0.90[EUR][1000 genomes]
rs12525777	0.91[EUR][1000 genomes]
rs12526164	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12526787	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12526827	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12526961	0.91[EUR][1000 genomes]
rs12527634	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12528385	0.91[EUR][1000 genomes]
rs12528391	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12528866	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12529284	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529309	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12529984	0.93[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs12530057	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12530358	0.91[EUR][1000 genomes]
rs13206086	1.00[JPT][hapmap]
rs16869156	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs16869158	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs16869170	0.93[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869211	0.92[JPT][hapmap]
rs16869221	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16869228	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16869238	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16869243	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16869244	0.92[JPT][hapmap]
rs16869267	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16869273	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16869338	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16869340	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869353	0.87[ASW][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869370	0.93[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869371	0.87[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869373	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16880770	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1739338	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17634272	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17634491	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs17635446	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17635510	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17706748	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17706833	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17713105	1.00[CEU][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs17713212	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17713547	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2207423	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2207425	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2273210	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2293297	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295200	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2346889	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2346890	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2639291	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2639293	0.83[ASN][1000 genomes]
rs2639297	0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691486	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2691488	0.82[EUR][1000 genomes]
rs2691490	0.82[EUR][1000 genomes]
rs2691493	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2691494	0.82[EUR][1000 genomes]
rs2691495	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2691496	0.93[CEU][hapmap];0.83[GIH][hapmap];0.82[EUR][1000 genomes]
rs2747702	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs2747703	1.00[JPT][hapmap]
rs2842063	0.93[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2842081	0.82[EUR][1000 genomes]
rs2881632	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3193656	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34246525	0.90[EUR][1000 genomes]
rs35159719	0.96[EUR][1000 genomes]
rs3736751	1.00[JPT][hapmap]
rs3736752	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs3763252	0.83[ASN][1000 genomes]
rs3846746	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs3846748	0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs3846750	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3889007	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41265349	0.84[EUR][1000 genomes]
rs4283855	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4496758	0.93[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs45460797	0.81[EUR][1000 genomes]
rs55639214	0.90[EUR][1000 genomes]
rs55761717	0.91[EUR][1000 genomes]
rs55968813	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55990553	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55990831	0.91[EUR][1000 genomes]
rs56074506	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56114703	0.90[EUR][1000 genomes]
rs56143128	0.95[EUR][1000 genomes]
rs56179165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56322111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56397968	0.84[EUR][1000 genomes]
rs57219733	0.83[ASN][1000 genomes]
rs57435529	0.83[ASN][1000 genomes]
rs57563851	0.84[ASN][1000 genomes]
rs57731996	0.89[ASN][1000 genomes]
rs58144467	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58370765	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58637377	0.91[EUR][1000 genomes]
rs58691499	0.83[ASN][1000 genomes]
rs59268472	0.83[ASN][1000 genomes]
rs59275635	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59635844	0.83[ASN][1000 genomes]
rs59698166	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59760243	0.89[ASN][1000 genomes]
rs61223738	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6455367	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs6455369	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6455370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6455371	1.00[JPT][hapmap]
rs6900840	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6901232	0.81[EUR][1000 genomes]
rs6901904	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6902797	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6902986	1.00[JPT][hapmap]
rs6906572	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6906592	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6910177	0.83[ASN][1000 genomes]
rs6910903	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6911812	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911983	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913548	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914298	0.83[ASN][1000 genomes]
rs6915405	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs6916974	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917368	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6918393	0.87[CEU][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6919794	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6920515	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6922680	1.00[JPT][hapmap]
rs6926591	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6930397	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6931901	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs6932470	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6933150	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6933337	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6933784	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6936018	0.83[ASN][1000 genomes]
rs6939478	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6939814	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6940416	0.82[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941205	0.92[JPT][hapmap]
rs6941595	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6942012	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73474927	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73474934	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73474937	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73474966	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73474986	0.83[ASN][1000 genomes]
rs73474996	0.83[ASN][1000 genomes]
rs73474998	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73476866	0.83[ASN][1000 genomes]
rs73476886	0.83[ASN][1000 genomes]
rs73476890	0.83[ASN][1000 genomes]
rs73476892	0.83[ASN][1000 genomes]
rs73476897	0.83[ASN][1000 genomes]
rs73476899	0.81[ASN][1000 genomes]
rs73476900	0.83[ASN][1000 genomes]
rs73476902	0.83[ASN][1000 genomes]
rs73478808	0.83[ASN][1000 genomes]
rs73478819	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73480261	0.93[ASN][1000 genomes]
rs73480271	0.93[ASN][1000 genomes]
rs73480275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482553	0.83[ASN][1000 genomes]
rs73482554	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73482557	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73482566	0.83[ASN][1000 genomes]
rs73482583	0.83[ASN][1000 genomes]
rs73482585	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73482601	0.86[ASN][1000 genomes]
rs73484507	0.86[ASN][1000 genomes]
rs73485115	0.89[ASN][1000 genomes]
rs73485116	0.89[ASN][1000 genomes]
rs73485118	0.89[ASN][1000 genomes]
rs73485126	0.89[ASN][1000 genomes]
rs73485133	0.89[ASN][1000 genomes]
rs73485137	0.89[ASN][1000 genomes]
rs73485152	0.89[ASN][1000 genomes]
rs73489063	0.89[ASN][1000 genomes]
rs73489067	0.89[ASN][1000 genomes]
rs73489091	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73489092	0.89[ASN][1000 genomes]
rs73490322	0.83[ASN][1000 genomes]
rs73490323	0.83[ASN][1000 genomes]
rs73490338	0.81[ASN][1000 genomes]
rs7450771	0.95[EUR][1000 genomes]
rs7739098	0.86[JPT][hapmap]
rs7739517	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740873	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7741187	0.89[ASN][1000 genomes]
rs7741265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743819	0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs7752409	0.93[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753355	0.93[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7756774	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7757026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759464	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7765110	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7766075	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7767109	1.00[JPT][hapmap]
rs7769582	0.93[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773794	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775962	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9283835	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294868	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9294871	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9294872	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9294874	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs9294876	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9446245	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9446248	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9446252	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9446258	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9446267	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455092	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs9455093	0.80[AMR][1000 genomes]
rs9455094	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9455097	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9455101	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9455104	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9455105	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9455113	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455114	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455121	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455130	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455132	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9455133	1.00[JPT][hapmap]
rs9455139	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455140	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455144	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455150	1.00[CEU][hapmap];0.92[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs9455151	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9455158	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9455160	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455161	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455167	0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9455168	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455176	0.83[ASN][1000 genomes]
rs9455177	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9455178	0.83[ASN][1000 genomes]
rs9455181	0.84[EUR][1000 genomes]
rs9455182	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12216376	C10orf140	trans	cerebellum	SCAN
rs12216376	C6orf57	cis	parietal	SCAN
rs12216376	C6orf57	cis	cerebellum	SCAN

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71277200-71278600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:71277200-71285600	Weak transcription	Aorta	Aorta
3	chr6:71277200-71285800	Weak transcription	Lung	lung
4	chr6:71277200-71289200	Weak transcription	Ovary	ovary
5	chr6:71277200-71290000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:71277200-71290000	Weak transcription	Left Ventricle	heart
7	chr6:71277200-71290000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:71277200-71290600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:71277200-71290600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:71277200-71292000	Weak transcription	Small Intestine	intestine
11	chr6:71277200-71292400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:71277200-71294400	Weak transcription	HSMM	muscle
13	chr6:71277200-71296800	Weak transcription	Pancreas	Pancrea
14	chr6:71277200-71300200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:71277200-71303200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:71277200-71310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:71277400-71278400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:71277400-71278400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:71277400-71278400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:71277400-71278400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:71277400-71278400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:71277400-71278400	Enhancers	HMEC	breast
23	chr6:71277400-71279000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:71277400-71279000	Weak transcription	Fetal Brain Female	brain
25	chr6:71277400-71280000	Weak transcription	Fetal Stomach	stomach
26	chr6:71277400-71281400	Weak transcription	A549	lung
27	chr6:71277400-71288600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:71277400-71289200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:71277400-71289200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:71277400-71289200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:71277400-71289200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:71277400-71289200	Weak transcription	Osteobl	bone
33	chr6:71277400-71289400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:71277400-71289600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:71277400-71289600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:71277400-71289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:71277400-71289800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:71277400-71289800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:71277400-71290000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:71277400-71290000	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:71277400-71290000	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:71277400-71290000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:71277400-71290400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:71277400-71290600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:71277400-71290600	Weak transcription	Fetal Intestine Small	intestine
46	chr6:71277400-71294200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:71277400-71294800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:71277400-71295000	Weak transcription	HUVEC	blood vessel
49	chr6:71277400-71299000	Weak transcription	NHDF-Ad	bronchial
50	chr6:71277400-71300600	Weak transcription	H9 Cell Line	embryonic stem cell

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