Variant report

Variant	rs11965656
Chromosome Location	chr6:71183620-71183621
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71179204..71182297-chr6:71182388..71185236,3	K562	blood:
2	chr6:71169685..71171410-chr6:71183568..71186489,2	K562	blood:

Extended variants
information (count: 281 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:274)

rs_ID	r²[population]
rs10214805	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs10455706	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10485118	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10485119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1048886	1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1075262	1.00[JPT][hapmap]
rs1075263	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10945230	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10945231	0.93[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs1208476	1.00[JPT][hapmap]
rs1208477	1.00[JPT][hapmap]
rs1208480	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12180997	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12190556	0.84[JPT][hapmap]
rs12191321	0.82[EUR][1000 genomes]
rs12197942	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12197963	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12200777	0.93[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs12201029	0.82[EUR][1000 genomes]
rs12203089	0.83[EUR][1000 genomes]
rs12203298	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12209965	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12216376	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12524814	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12525538	0.83[EUR][1000 genomes]
rs12525777	0.96[EUR][1000 genomes]
rs12526164	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12526787	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs12526827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526961	0.96[EUR][1000 genomes]
rs12527634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528385	0.96[EUR][1000 genomes]
rs12528391	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12528866	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529284	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12529309	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs12529984	0.87[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs12530057	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs12530358	0.96[EUR][1000 genomes]
rs13206086	1.00[JPT][hapmap]
rs16869156	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16869158	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16869168	0.91[ASN][1000 genomes]
rs16869170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16869211	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869221	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869228	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869238	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869244	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs16869267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869273	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16869338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16869340	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869353	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869371	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869373	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16880770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1739338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17634272	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs17634491	0.96[EUR][1000 genomes]
rs17635446	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs17635510	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs17706748	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs17706833	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs17713105	0.93[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs17713212	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs17713547	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs2207423	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2207425	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs2273210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293297	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2295200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2346889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2346890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2639291	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2639293	1.00[ASN][1000 genomes]
rs2639297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2691486	1.00[CEU][hapmap]
rs2691496	1.00[CEU][hapmap]
rs2747702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2747703	1.00[JPT][hapmap]
rs2842063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2881632	0.81[EUR][1000 genomes]
rs3193656	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34246525	0.83[EUR][1000 genomes]
rs35159719	0.91[EUR][1000 genomes]
rs3736751	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3736752	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs3846746	0.87[CEU][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs3846748	0.87[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs3846750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3889007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41265349	0.89[EUR][1000 genomes]
rs4283855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4496758	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45460797	0.83[EUR][1000 genomes]
rs4707802	0.89[ASN][1000 genomes]
rs55639214	0.83[EUR][1000 genomes]
rs55761717	0.96[EUR][1000 genomes]
rs55968813	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55990553	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55990831	0.96[EUR][1000 genomes]
rs56074506	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56114703	0.83[EUR][1000 genomes]
rs56143128	0.90[EUR][1000 genomes]
rs56179165	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56322111	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56351105	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56397968	0.89[EUR][1000 genomes]
rs57219733	1.00[ASN][1000 genomes]
rs57343016	0.87[ASN][1000 genomes]
rs57563851	0.80[ASN][1000 genomes]
rs57731996	0.92[ASN][1000 genomes]
rs58144467	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58370765	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58377462	0.96[ASN][1000 genomes]
rs58637377	0.96[EUR][1000 genomes]
rs58691499	1.00[ASN][1000 genomes]
rs59268472	1.00[ASN][1000 genomes]
rs59275635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59372712	0.85[ASN][1000 genomes]
rs59635844	1.00[ASN][1000 genomes]
rs59698166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59760243	0.92[ASN][1000 genomes]
rs61223738	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61479468	0.96[ASN][1000 genomes]
rs6455367	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6455369	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6455370	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6455371	1.00[JPT][hapmap]
rs6900840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902773	0.89[ASN][1000 genomes]
rs6902797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6902986	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6906572	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6906592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910177	1.00[ASN][1000 genomes]
rs6910903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6911812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911983	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6913548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6914298	1.00[ASN][1000 genomes]
rs6915405	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6918393	0.93[CEU][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919794	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920515	0.83[EUR][1000 genomes]
rs6922680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6923292	0.93[ASN][1000 genomes]
rs6926591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6930397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6931901	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932470	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6933337	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933784	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6934660	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936018	1.00[ASN][1000 genomes]
rs6936550	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6939478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6939814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6940416	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941205	0.92[JPT][hapmap]
rs6941595	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6942012	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73474910	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73474927	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73474934	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73474937	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73474966	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73474967	0.96[ASN][1000 genomes]
rs73474971	0.96[ASN][1000 genomes]
rs73474974	0.96[ASN][1000 genomes]
rs73474986	1.00[ASN][1000 genomes]
rs73474996	1.00[ASN][1000 genomes]
rs73474998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73476866	1.00[ASN][1000 genomes]
rs73476886	1.00[ASN][1000 genomes]
rs73476890	1.00[ASN][1000 genomes]
rs73476892	1.00[ASN][1000 genomes]
rs73476897	1.00[ASN][1000 genomes]
rs73476899	0.98[ASN][1000 genomes]
rs73476900	1.00[ASN][1000 genomes]
rs73476902	1.00[ASN][1000 genomes]
rs73478808	1.00[ASN][1000 genomes]
rs73478819	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480261	0.89[ASN][1000 genomes]
rs73480271	0.89[ASN][1000 genomes]
rs73480275	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73480280	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73482553	1.00[ASN][1000 genomes]
rs73482554	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482566	1.00[ASN][1000 genomes]
rs73482580	0.87[ASN][1000 genomes]
rs73482583	1.00[ASN][1000 genomes]
rs73482585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482601	0.96[ASN][1000 genomes]
rs73484507	0.96[ASN][1000 genomes]
rs73485115	0.92[ASN][1000 genomes]
rs73485116	0.92[ASN][1000 genomes]
rs73485118	0.92[ASN][1000 genomes]
rs73485126	0.92[ASN][1000 genomes]
rs73485133	0.92[ASN][1000 genomes]
rs73485137	0.92[ASN][1000 genomes]
rs73485152	0.92[ASN][1000 genomes]
rs73489063	0.92[ASN][1000 genomes]
rs73489067	0.92[ASN][1000 genomes]
rs73489091	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73489092	0.92[ASN][1000 genomes]
rs7450771	0.90[EUR][1000 genomes]
rs7739098	0.86[JPT][hapmap]
rs7739517	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7740873	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7741187	0.92[ASN][1000 genomes]
rs7741265	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7742044	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7743819	0.87[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs7752409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756774	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757026	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7759464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7766075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7767149	0.93[ASN][1000 genomes]
rs7769582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773794	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7775962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9283835	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9294868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294871	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294876	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9446246	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9446248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9446252	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446258	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9446267	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9455092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9455093	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9455094	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455097	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9455100	0.96[ASN][1000 genomes]
rs9455101	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9455104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455114	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455130	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9455133	1.00[JPT][hapmap]
rs9455139	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455140	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455144	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455150	0.93[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs9455151	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs9455158	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455160	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455161	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455162	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455163	0.93[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9455167	0.82[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9455168	0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs9455177	0.81[EUR][1000 genomes]
rs9455182	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11965656	C6orf57	cis	cerebellum	SCAN
rs11965656	C10orf140	trans	cerebellum	SCAN
rs11965656	C6orf57	cis	parietal	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71124400-71192800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:71125400-71188800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:71125400-71188800	Weak transcription	HSMM	muscle
4	chr6:71130200-71185400	Weak transcription	K562	blood
5	chr6:71134000-71213400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:71136800-71213600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:71141400-71186800	Weak transcription	Fetal Brain Female	brain
8	chr6:71149000-71185600	Weak transcription	Aorta	Aorta
9	chr6:71154600-71188800	Weak transcription	Fetal Heart	heart
10	chr6:71155000-71185400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:71155400-71184000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:71158200-71185600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:71158200-71212400	Weak transcription	Fetal Brain Male	brain
14	chr6:71158400-71184000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:71158400-71186800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:71158400-71198000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:71158400-71213600	Weak transcription	NHEK	skin
18	chr6:71158800-71212600	Weak transcription	Colonic Mucosa	Colon
19	chr6:71163000-71184200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:71163000-71184400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:71163200-71184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:71163200-71184200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:71167200-71185400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:71168000-71185400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:71168200-71189200	Weak transcription	Psoas Muscle	Psoas
26	chr6:71171000-71186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:71172600-71186800	Weak transcription	Primary T cells from cord blood	blood
28	chr6:71173800-71187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:71175000-71197400	Weak transcription	Fetal Thymus	thymus
30	chr6:71175400-71186800	Weak transcription	Small Intestine	intestine
31	chr6:71175800-71193400	Weak transcription	Thymus	Thymus
32	chr6:71177200-71186800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:71177800-71196200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:71178000-71210400	Weak transcription	Lung	lung
35	chr6:71178800-71185600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:71179600-71191000	Weak transcription	Gastric	stomach
37	chr6:71179800-71186800	Weak transcription	Spleen	Spleen
38	chr6:71179800-71189000	Weak transcription	Stomach Mucosa	stomach
39	chr6:71180400-71212600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:71180800-71187600	Strong transcription	Fetal Intestine Large	intestine
41	chr6:71180800-71200000	Weak transcription	Brain Anterior Caudate	brain
42	chr6:71181000-71188200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr6:71181600-71184400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:71181600-71213600	Weak transcription	HMEC	breast
45	chr6:71181600-71215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:71181800-71187200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:71182000-71183800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:71182000-71192600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:71182000-71196600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:71182200-71183800	Weak transcription	Primary T cells fromperipheralblood	blood

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