Variant report

Variant	rs6941205
Chromosome Location	chr6:71104869-71104870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:71103256..71105709-chr6:71376472..71378763,2	K562	blood:
2	chr6:70931634..70934194-chr6:71104182..71105989,2	K562	blood:
3	chr6:71104762..71107746-chr6:105401778..105404768,2	K562	blood:
4	chr6:71104620..71107220-chr6:71165268..71168760,3	K562	blood:
5	chr6:70991053..70993906-chr6:71103584..71105214,3	K562	blood:

Variant related genes	Relation type
ENSG00000253809	Chromatin interaction
ENSG00000112280	Chromatin interaction
ENSG00000112305	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10485118	1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10485119	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs1048886	1.00[JPT][hapmap]
rs1075262	0.92[JPT][hapmap]
rs1075263	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10945230	0.92[JPT][hapmap]
rs11965656	0.92[JPT][hapmap]
rs1208476	0.92[JPT][hapmap]
rs1208477	0.92[JPT][hapmap]
rs12197942	0.92[JPT][hapmap]
rs12197963	0.92[JPT][hapmap]
rs12203298	0.92[JPT][hapmap]
rs12209965	0.92[JPT][hapmap]
rs12216376	0.92[JPT][hapmap]
rs12526164	0.92[JPT][hapmap]
rs12526827	0.92[JPT][hapmap]
rs12527634	0.92[JPT][hapmap]
rs12528391	0.83[ASN][1000 genomes]
rs12529284	0.92[JPT][hapmap]
rs13206086	0.92[JPT][hapmap]
rs16869156	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869158	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869168	0.81[ASN][1000 genomes]
rs16869170	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs16869211	1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16869221	1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap]
rs16869228	0.91[JPT][hapmap]
rs16869238	0.92[JPT][hapmap]
rs16869243	0.92[JPT][hapmap]
rs16869244	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16869267	0.92[JPT][hapmap]
rs16869273	0.92[JPT][hapmap]
rs16869338	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs16869353	1.00[GIH][hapmap];0.92[JPT][hapmap]
rs16869370	0.92[JPT][hapmap]
rs16869371	0.92[JPT][hapmap]
rs16869373	0.92[JPT][hapmap]
rs16880770	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs1739338	0.92[JPT][hapmap]
rs2207423	0.92[JPT][hapmap]
rs2273210	0.92[JPT][hapmap]
rs2293297	0.92[JPT][hapmap]
rs2295200	0.92[JPT][hapmap]
rs2346889	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2346890	0.92[JPT][hapmap]
rs2639297	0.92[JPT][hapmap]
rs2747702	0.92[JPT][hapmap]
rs2747703	0.92[JPT][hapmap]
rs2842063	0.85[JPT][hapmap]
rs3193656	0.91[JPT][hapmap]
rs3736751	1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap]
rs3736752	1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs3763252	1.00[EUR][1000 genomes]
rs3846746	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs3846748	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs3846750	0.92[JPT][hapmap]
rs3889007	0.92[JPT][hapmap]
rs4283855	0.92[JPT][hapmap]
rs4496758	0.92[JPT][hapmap]
rs4707802	0.83[ASN][1000 genomes]
rs56351105	0.85[ASN][1000 genomes]
rs57219733	1.00[EUR][1000 genomes]
rs57435529	1.00[EUR][1000 genomes]
rs57563851	1.00[EUR][1000 genomes]
rs57731996	1.00[EUR][1000 genomes]
rs58051327	0.81[ASN][1000 genomes]
rs58144467	0.83[ASN][1000 genomes]
rs59268472	1.00[EUR][1000 genomes]
rs59372712	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6455367	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs6455370	0.92[JPT][hapmap]
rs6455371	0.92[JPT][hapmap]
rs6900840	0.91[JPT][hapmap]
rs6902797	0.90[JPT][hapmap]
rs6902986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6906572	0.92[JPT][hapmap]
rs6906592	0.92[JPT][hapmap]
rs6910903	0.92[JPT][hapmap]
rs6911812	0.92[JPT][hapmap]
rs6911983	0.92[JPT][hapmap]
rs6913548	0.92[JPT][hapmap]
rs6915405	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6916974	0.92[JPT][hapmap]
rs6917368	0.92[JPT][hapmap]
rs6918182	0.80[AFR][1000 genomes]
rs6918393	0.85[JPT][hapmap]
rs6918722	0.80[AFR][1000 genomes]
rs6922680	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs6923292	0.83[ASN][1000 genomes]
rs6926591	0.92[JPT][hapmap]
rs6930397	0.92[JPT][hapmap]
rs6931901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6932470	0.83[ASN][1000 genomes]
rs6933150	0.92[JPT][hapmap]
rs6933784	0.92[JPT][hapmap]
rs6934660	0.85[ASN][1000 genomes]
rs6936550	0.85[ASN][1000 genomes]
rs6939478	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs6939814	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs6940416	0.92[JPT][hapmap]
rs6942012	0.92[JPT][hapmap]
rs73474910	0.85[ASN][1000 genomes]
rs73474927	0.81[ASN][1000 genomes]
rs73474934	0.83[ASN][1000 genomes]
rs73474937	0.83[ASN][1000 genomes]
rs73474991	0.80[AFR][1000 genomes]
rs73474996	1.00[EUR][1000 genomes]
rs73476866	1.00[EUR][1000 genomes]
rs73476899	1.00[EUR][1000 genomes]
rs73476900	1.00[EUR][1000 genomes]
rs73480261	1.00[EUR][1000 genomes]
rs73480271	1.00[EUR][1000 genomes]
rs73480283	0.80[AFR][1000 genomes]
rs73485152	1.00[EUR][1000 genomes]
rs73485159	0.80[AFR][1000 genomes]
rs73489063	1.00[EUR][1000 genomes]
rs73489067	1.00[EUR][1000 genomes]
rs73489092	1.00[EUR][1000 genomes]
rs73490322	1.00[EUR][1000 genomes]
rs73490323	1.00[EUR][1000 genomes]
rs7740873	0.92[JPT][hapmap]
rs7741187	1.00[EUR][1000 genomes]
rs7741265	0.92[JPT][hapmap]
rs7743819	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7752409	0.92[JPT][hapmap]
rs7753355	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7757026	0.92[JPT][hapmap]
rs7759464	0.92[JPT][hapmap]
rs7765110	0.92[JPT][hapmap]
rs7766075	0.92[JPT][hapmap]
rs7767109	0.92[JPT][hapmap]
rs7767149	0.83[ASN][1000 genomes]
rs7769582	0.92[JPT][hapmap]
rs7775962	0.92[JPT][hapmap]
rs9283835	0.92[JPT][hapmap]
rs9294868	0.92[JPT][hapmap]
rs9294872	0.92[JPT][hapmap]
rs9294874	0.92[JPT][hapmap]
rs9294876	0.92[JPT][hapmap]
rs9446245	0.92[JPT][hapmap]
rs9446248	0.89[JPT][hapmap]
rs9446267	0.92[JPT][hapmap]
rs9455092	0.92[JPT][hapmap]
rs9455104	0.92[JPT][hapmap]
rs9455105	0.84[JPT][hapmap]
rs9455113	0.92[JPT][hapmap]
rs9455121	0.92[JPT][hapmap]
rs9455130	0.92[JPT][hapmap]
rs9455132	0.92[JPT][hapmap]
rs9455133	0.92[JPT][hapmap]
rs9455158	0.85[JPT][hapmap]
rs9455160	0.92[JPT][hapmap]
rs9455162	0.92[JPT][hapmap]
rs9455163	0.92[JPT][hapmap]
rs9455167	1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9455168	0.82[JPT][hapmap]
rs9455176	1.00[EUR][1000 genomes]
rs9455178	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71097600-71108000	Enhancers	Fetal Intestine Large	intestine
2	chr6:71099400-71108400	Enhancers	Fetal Intestine Small	intestine
3	chr6:71100400-71105800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:71100400-71105800	Weak transcription	A549	lung
5	chr6:71102000-71105800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:71102200-71105000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:71103600-71122400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:71104200-71105000	Enhancers	HepG2	liver
9	chr6:71104200-71105800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:71104200-71107200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:71104200-71108000	Enhancers	Stomach Mucosa	stomach
12	chr6:71104400-71107200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:71104400-71108200	Active TSS	K562	blood
14	chr6:71104600-71106200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:71104800-71106200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:71104800-71106400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:71104800-71107000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:71104800-71107000	Weak transcription	Placenta	Placenta
19	chr6:71104800-71107000	Weak transcription	Pancreas	Pancrea
20	chr6:71104800-71107200	Weak transcription	Colonic Mucosa	Colon

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