Variant report

Variant	rs58519460
Chromosome Location	chr6:71831347-71831348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11968727	0.97[ASN][1000 genomes]
rs11970526	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12664957	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418674	0.95[ASN][1000 genomes]
rs1418675	0.96[ASN][1000 genomes]
rs1578729	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880779	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1857225	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935790	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2347920	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707893	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4707894	0.96[ASN][1000 genomes]
rs55923926	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56204621	0.97[ASN][1000 genomes]
rs56929754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57444908	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57661037	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58806922	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58922847	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58989863	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59091480	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59180645	0.97[ASN][1000 genomes]
rs59236253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59292204	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60573258	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60600859	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60969202	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60982113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404264	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62404273	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62404274	0.96[ASN][1000 genomes]
rs62404276	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455405	0.94[ASN][1000 genomes]
rs6936049	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73498954	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7760147	0.97[ASN][1000 genomes]
rs9446340	0.96[ASN][1000 genomes]
rs9446341	0.97[ASN][1000 genomes]
rs9455329	0.97[ASN][1000 genomes]
rs9455330	0.98[ASN][1000 genomes]
rs9455332	0.97[ASN][1000 genomes]
rs9455334	0.95[ASN][1000 genomes]
rs956822	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs992998	0.96[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71824400-71835400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:71827800-71832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:71831200-71832400	Enhancers	Fetal Muscle Leg	muscle

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