Variant report

Variant	rs6936049
Chromosome Location	chr6:71824130-71824131
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11968727	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11970526	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12662304	0.86[CHB][hapmap]
rs12664957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418674	0.99[ASN][1000 genomes]
rs1418675	1.00[ASN][1000 genomes]
rs1578729	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880779	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857225	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935790	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2347920	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707893	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4707894	0.96[ASN][1000 genomes]
rs55923926	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56204621	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56929754	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57444908	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57661037	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58519460	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58806922	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58922847	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58989863	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59091480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59180645	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59236253	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59292204	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60573258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60600859	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60969202	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60982113	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62404264	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62404273	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62404274	0.96[ASN][1000 genomes]
rs62404276	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6455405	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73498954	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7760147	0.97[ASN][1000 genomes]
rs9364137	0.87[CHB][hapmap]
rs9446340	0.96[ASN][1000 genomes]
rs9446341	0.97[ASN][1000 genomes]
rs9455329	0.97[ASN][1000 genomes]
rs9455330	0.98[ASN][1000 genomes]
rs9455332	0.97[ASN][1000 genomes]
rs9455334	0.95[ASN][1000 genomes]
rs956822	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992998	0.96[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71817800-71824400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:71818000-71824200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:71818200-71824200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:71823400-71825600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:71823600-71824400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:71823800-71825000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links