Variant report

Variant	rs9446340
Chromosome Location	chr6:71826158-71826159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11968727	0.97[ASN][1000 genomes]
rs11970526	0.98[ASN][1000 genomes]
rs12662304	0.80[CHB][hapmap]
rs12664957	0.96[ASN][1000 genomes]
rs1418674	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418675	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1578729	0.98[ASN][1000 genomes]
rs16880779	0.96[ASN][1000 genomes]
rs1857225	0.98[ASN][1000 genomes]
rs1935790	0.94[ASN][1000 genomes]
rs2347920	0.98[ASN][1000 genomes]
rs4707893	0.99[ASN][1000 genomes]
rs4707894	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923926	0.98[ASN][1000 genomes]
rs56204621	0.97[ASN][1000 genomes]
rs56929754	0.96[ASN][1000 genomes]
rs57444908	0.98[ASN][1000 genomes]
rs57661037	0.98[ASN][1000 genomes]
rs58519460	0.96[ASN][1000 genomes]
rs58806922	0.98[ASN][1000 genomes]
rs58922847	0.98[ASN][1000 genomes]
rs58989863	0.98[ASN][1000 genomes]
rs59091480	0.98[ASN][1000 genomes]
rs59180645	0.97[ASN][1000 genomes]
rs59236253	0.96[ASN][1000 genomes]
rs59292204	0.98[ASN][1000 genomes]
rs60573258	0.97[ASN][1000 genomes]
rs60600859	0.98[ASN][1000 genomes]
rs60969202	0.98[ASN][1000 genomes]
rs60982113	0.96[ASN][1000 genomes]
rs62404264	0.95[ASN][1000 genomes]
rs62404273	0.98[ASN][1000 genomes]
rs62404274	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62404276	0.96[ASN][1000 genomes]
rs6455405	0.94[ASN][1000 genomes]
rs6936049	0.96[ASN][1000 genomes]
rs73498954	0.98[ASN][1000 genomes]
rs7760147	0.97[ASN][1000 genomes]
rs9364137	0.80[CHB][hapmap]
rs9446341	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9455329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9455330	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9455332	0.97[ASN][1000 genomes]
rs9455334	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956822	0.95[ASN][1000 genomes]
rs992998	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9446340	MTO1	cis	cerebellum	SCAN
rs9446340	CD109	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71824200-71826200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:71824400-71835400	Weak transcription	H9 Cell Line	embryonic stem cell

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