Variant report

Variant	rs956822
Chromosome Location	chr6:71817964-71817965
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71816909..71818736-chr6:71820652..71822714,2	K562	blood:
2	chr6:71812578..71814427-chr6:71817405..71819231,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11968727	0.96[ASN][1000 genomes]
rs11970526	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662304	0.80[CHB][hapmap]
rs12664957	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418674	0.98[ASN][1000 genomes]
rs1418675	0.99[ASN][1000 genomes]
rs1578729	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16880779	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1857225	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935790	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2347920	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707893	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707894	0.95[ASN][1000 genomes]
rs55923926	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56204621	0.96[ASN][1000 genomes]
rs56929754	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57444908	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57661037	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58129816	0.82[AMR][1000 genomes]
rs58519460	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58806922	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58922847	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58989863	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59091480	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59180645	0.96[ASN][1000 genomes]
rs59236253	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59292204	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60573258	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60600859	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60969202	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60982113	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62404264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404273	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404274	0.95[ASN][1000 genomes]
rs62404276	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62404281	0.82[AMR][1000 genomes]
rs6455405	0.98[ASN][1000 genomes]
rs6936049	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73498954	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7760147	0.96[ASN][1000 genomes]
rs9364137	0.81[CHB][hapmap]
rs9446340	0.95[ASN][1000 genomes]
rs9446341	0.96[ASN][1000 genomes]
rs9455329	0.98[ASN][1000 genomes]
rs9455330	0.97[ASN][1000 genomes]
rs9455332	0.96[ASN][1000 genomes]
rs9455334	0.94[ASN][1000 genomes]
rs992998	0.97[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71814600-71818800	Enhancers	Fetal Brain Male	brain
2	chr6:71815400-71818000	Enhancers	Brain Substantia Nigra	brain
3	chr6:71815800-71818000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:71815800-71818200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:71815800-71818200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:71815800-71818200	Enhancers	Brain Germinal Matrix	brain
7	chr6:71816200-71818200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:71816200-71818200	Enhancers	Fetal Heart	heart
9	chr6:71816400-71818000	Enhancers	Colon Smooth Muscle	Colon
10	chr6:71816600-71818000	Enhancers	Fetal Brain Female	brain
11	chr6:71816600-71818200	Flanking Active TSS	Osteobl	bone
12	chr6:71816800-71818600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:71817000-71818200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:71817200-71818000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:71817200-71818000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:71817200-71818000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:71817200-71818200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:71817200-71818600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:71817400-71818000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:71817400-71818000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:71817400-71818000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:71817400-71818000	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr6:71817400-71818000	Flanking Active TSS	Fetal Lung	lung
24	chr6:71817400-71818000	Active TSS	HSMM	muscle
25	chr6:71817400-71818200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:71817400-71818200	Flanking Active TSS	Fetal Muscle Leg	muscle
27	chr6:71817400-71818200	Active TSS	HSMMtube	muscle
28	chr6:71817400-71818200	Flanking Active TSS	NH-A	brain
29	chr6:71817600-71818000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:71817600-71818000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:71817600-71818000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr6:71817600-71818000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:71817600-71818000	Active TSS	Aorta	Aorta
34	chr6:71817600-71818000	Active TSS	Brain Angular Gyrus	brain
35	chr6:71817600-71818000	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr6:71817600-71818000	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr6:71817600-71818000	Active TSS	Fetal Kidney	kidney
38	chr6:71817600-71818000	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:71817600-71818000	Active TSS	Fetal Muscle Trunk	muscle
40	chr6:71817600-71818000	Active TSS	Psoas Muscle	Psoas
41	chr6:71817600-71818000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr6:71817600-71818000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr6:71817600-71818000	Flanking Active TSS	Hela-S3	cervix
44	chr6:71817600-71818000	Flanking Active TSS	HUVEC	blood vessel
45	chr6:71817600-71818000	Active TSS	NHLF	lung
46	chr6:71817600-71818200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr6:71817600-71818200	Enhancers	Fetal Stomach	stomach
48	chr6:71817600-71819400	Enhancers	Left Ventricle	heart
49	chr6:71817800-71818000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:71817800-71818000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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