Variant report

Variant	rs1935790
Chromosome Location	chr6:71816906-71816907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11968727	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11970526	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12662304	0.80[CHB][hapmap];0.91[MEX][hapmap]
rs12664957	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418674	0.97[ASN][1000 genomes]
rs1418675	0.98[ASN][1000 genomes]
rs1578729	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880779	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1857225	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2347920	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707893	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707894	0.94[ASN][1000 genomes]
rs55923926	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56204621	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56929754	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57444908	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57661037	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58519460	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58806922	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58922847	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58989863	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59091480	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59180645	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59236253	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59292204	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60573258	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60600859	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60969202	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60982113	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62404264	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62404273	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62404274	0.94[ASN][1000 genomes]
rs62404276	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6455405	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6936049	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73498954	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760147	0.95[ASN][1000 genomes]
rs9364137	0.80[CHB][hapmap]
rs9446340	0.94[ASN][1000 genomes]
rs9446341	0.95[ASN][1000 genomes]
rs9455329	0.97[ASN][1000 genomes]
rs9455330	0.96[ASN][1000 genomes]
rs9455332	0.95[ASN][1000 genomes]
rs9455334	0.94[ASN][1000 genomes]
rs956822	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992998	0.96[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71814000-71817600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:71814600-71818800	Enhancers	Fetal Brain Male	brain
3	chr6:71815200-71817400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:71815200-71817600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:71815200-71817600	Enhancers	Brain Hippocampus Middle	brain
6	chr6:71815400-71817000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:71815400-71817600	Enhancers	Brain Anterior Caudate	brain
8	chr6:71815400-71817600	Enhancers	Fetal Kidney	kidney
9	chr6:71815400-71818000	Enhancers	Brain Substantia Nigra	brain
10	chr6:71815800-71817000	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:71815800-71817200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:71815800-71817200	Enhancers	Fetal Stomach	stomach
13	chr6:71815800-71817400	Enhancers	Fetal Lung	lung
14	chr6:71815800-71817600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:71815800-71818000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:71815800-71818200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:71815800-71818200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:71815800-71818200	Enhancers	Brain Germinal Matrix	brain
19	chr6:71816000-71817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:71816000-71817400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:71816000-71817400	Enhancers	NH-A	brain
22	chr6:71816000-71817600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:71816000-71817600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:71816000-71817600	Weak transcription	Left Ventricle	heart
25	chr6:71816000-71817800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:71816200-71817000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:71816200-71817000	Weak transcription	Right Atrium	heart
28	chr6:71816200-71818200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:71816200-71818200	Enhancers	Fetal Heart	heart
30	chr6:71816400-71817200	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:71816400-71817400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:71816400-71817400	Enhancers	HSMM	muscle
33	chr6:71816400-71817400	Enhancers	NHLF	lung
34	chr6:71816400-71818000	Enhancers	Colon Smooth Muscle	Colon
35	chr6:71816600-71817000	Enhancers	Aorta	Aorta
36	chr6:71816600-71817200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:71816600-71817200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:71816600-71817200	Enhancers	Placenta	Placenta
39	chr6:71816600-71817400	Enhancers	HSMMtube	muscle
40	chr6:71816600-71817600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:71816600-71817600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:71816600-71818000	Enhancers	Fetal Brain Female	brain
43	chr6:71816600-71818200	Flanking Active TSS	Osteobl	bone
44	chr6:71816800-71817000	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr6:71816800-71817000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:71816800-71817200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:71816800-71817400	Enhancers	Adipose Nuclei	Adipose
48	chr6:71816800-71817600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:71816800-71817600	Enhancers	Ovary	ovary
50	chr6:71816800-71817600	Enhancers	Skeletal Muscle Female	skeletal muscle

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