Variant report

Variant	rs59058205
Chromosome Location	chr15:42861689-42861690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:42860282-42863171	K562	blood:	n/a	n/a
2	POLR2A	chr15:42861539-42861839	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:

Variant related genes	Relation type
ENSG00000260490	TF binding region
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1044866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11541527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36090286	0.81[AFR][1000 genomes]
rs5009460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57349778	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58122107	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58562675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60060355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60606292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60697170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839827	1.00[AMR][1000 genomes]
rs61368952	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474811	0.85[AMR][1000 genomes]
rs6493048	0.88[AFR][1000 genomes]
rs6493049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166633	0.87[AMR][1000 genomes]
rs7172064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175059	0.87[AMR][1000 genomes]
rs7178822	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402762	0.85[AMR][1000 genomes]
rs73402776	0.85[AMR][1000 genomes]
rs73402796	0.87[AMR][1000 genomes]
rs73404708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404725	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404746	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404754	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404793	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406503	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs768118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033810	1.00[AMR][1000 genomes]
rs8034001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036927	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8037277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
2	chr15:42841800-42867000	Weak transcription	Ovary	ovary
3	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
4	chr15:42842400-42867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42842600-42867400	Weak transcription	Small Intestine	intestine
6	chr15:42842800-42867000	Weak transcription	Fetal Kidney	kidney
7	chr15:42843000-42863000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42849400-42866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:42849800-42862800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:42850000-42862800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:42851000-42861800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:42851400-42862800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:42851600-42866600	Weak transcription	Fetal Heart	heart
14	chr15:42852000-42867000	Weak transcription	Colonic Mucosa	Colon
15	chr15:42853400-42861800	Strong transcription	Fetal Brain Female	brain
16	chr15:42854200-42867000	Weak transcription	HSMMtube	muscle
17	chr15:42854800-42867000	Weak transcription	Pancreas	Pancrea
18	chr15:42855000-42864400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:42855200-42867000	Weak transcription	Esophagus	oesophagus
20	chr15:42855200-42867800	Weak transcription	Aorta	Aorta
21	chr15:42856000-42867000	Weak transcription	A549	lung
22	chr15:42857600-42867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:42857800-42867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:42857800-42867200	Weak transcription	Spleen	Spleen
25	chr15:42858000-42867000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:42858200-42867000	Weak transcription	Right Ventricle	heart
27	chr15:42858400-42866400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:42858800-42867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:42858800-42867000	Weak transcription	Brain Substantia Nigra	brain
30	chr15:42858800-42867000	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:42859000-42867200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:42859000-42868000	Weak transcription	Fetal Brain Male	brain
33	chr15:42859200-42866400	Weak transcription	HepG2	liver
34	chr15:42859200-42867000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:42859200-42867000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:42859200-42867000	Weak transcription	Brain Angular Gyrus	brain
37	chr15:42859200-42867000	Weak transcription	Fetal Lung	lung
38	chr15:42859200-42867000	Weak transcription	HSMM	muscle
39	chr15:42859200-42867000	Weak transcription	NH-A	brain
40	chr15:42859200-42867000	Weak transcription	NHEK	skin
41	chr15:42859400-42866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:42859400-42866800	Weak transcription	Hela-S3	cervix
43	chr15:42859400-42867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:42859400-42867000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:42859400-42867000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:42859400-42867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:42859600-42863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:42859600-42866400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:42859600-42866400	Weak transcription	K562	blood
50	chr15:42859600-42866600	Weak transcription	Rectal Mucosa Donor 29	rectum

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