Variant report

Variant	rs73404793
Chromosome Location	chr15:42836735-42836736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:42836521-42836745	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
HAUS2	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1044866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11541527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36090286	0.87[AFR][1000 genomes]
rs5009460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57349778	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58122107	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58562675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60060355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60606292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60697170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839827	1.00[AMR][1000 genomes]
rs61368952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474811	0.85[AMR][1000 genomes]
rs6493048	0.94[AFR][1000 genomes]
rs6493049	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166633	0.87[AMR][1000 genomes]
rs7172064	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175059	0.87[AMR][1000 genomes]
rs7178822	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402762	0.85[AMR][1000 genomes]
rs73402776	0.85[AMR][1000 genomes]
rs73402796	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404754	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406509	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406553	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs768118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033810	1.00[AMR][1000 genomes]
rs8034001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036927	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8037277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040624	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42793800-42837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:42797400-42839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:42797600-42839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:42799200-42839400	Weak transcription	Stomach Mucosa	stomach
5	chr15:42802400-42839200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:42803200-42837200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:42803600-42839400	Weak transcription	A549	lung
8	chr15:42805400-42836800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:42806200-42839000	Weak transcription	Fetal Brain Male	brain
10	chr15:42808400-42839000	Weak transcription	Fetal Heart	heart
11	chr15:42810200-42840200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:42811000-42837600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:42817400-42840200	Weak transcription	Pancreas	Pancrea
14	chr15:42821200-42839800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:42822200-42840200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:42822800-42840000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:42823400-42840200	Weak transcription	Psoas Muscle	Psoas
18	chr15:42823800-42838000	Weak transcription	Brain Angular Gyrus	brain
19	chr15:42824000-42840200	Weak transcription	Small Intestine	intestine
20	chr15:42824400-42839400	Weak transcription	Brain Substantia Nigra	brain
21	chr15:42824600-42838400	Weak transcription	HepG2	liver
22	chr15:42824600-42839600	Weak transcription	Right Ventricle	heart
23	chr15:42825800-42837200	Weak transcription	HMEC	breast
24	chr15:42826000-42837000	Weak transcription	Fetal Kidney	kidney
25	chr15:42827000-42837400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr15:42827600-42837200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:42830000-42837400	Strong transcription	Fetal Stomach	stomach
28	chr15:42830600-42837600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:42831000-42837800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:42831200-42839000	Strong transcription	Fetal Lung	lung
31	chr15:42831400-42839200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:42831600-42839000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:42831600-42840200	Weak transcription	Gastric	stomach
34	chr15:42833400-42837400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:42833400-42837400	Strong transcription	HSMM	muscle
36	chr15:42833400-42838000	Strong transcription	Primary T cells from cord blood	blood
37	chr15:42833400-42838200	Strong transcription	Placenta	Placenta
38	chr15:42833400-42838400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr15:42833600-42837800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:42834000-42838000	Strong transcription	Fetal Intestine Large	intestine
41	chr15:42834200-42837600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:42834400-42837000	Strong transcription	Fetal Intestine Small	intestine
43	chr15:42834400-42837200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:42834400-42837200	Strong transcription	Dnd41	blood
45	chr15:42834400-42837400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:42834400-42837800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:42834400-42838000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:42834400-42838000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:42834400-42839200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:42834400-42839400	Strong transcription	Fetal Muscle Leg	muscle

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