Variant report

Variant	rs60606292
Chromosome Location	chr15:42854201-42854202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42852524..42855141-chr15:42866022..42868628,2	K562	blood:
2	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:
3	chr15:42854080..42855765-chr15:42858958..42860703,2	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1044866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11541527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36090286	0.81[AFR][1000 genomes]
rs5009460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57349778	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58122107	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58562675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60060355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60697170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839827	1.00[AMR][1000 genomes]
rs61368952	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474811	0.85[AMR][1000 genomes]
rs6493048	0.88[AFR][1000 genomes]
rs6493049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166633	0.87[AMR][1000 genomes]
rs7172064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175059	0.87[AMR][1000 genomes]
rs7178822	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402762	0.85[AMR][1000 genomes]
rs73402776	0.85[AMR][1000 genomes]
rs73402796	0.87[AMR][1000 genomes]
rs73404708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404725	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404746	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404754	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404793	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406503	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs768118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033810	1.00[AMR][1000 genomes]
rs8034001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036927	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8037277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
2	chr15:42841800-42857000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:42841800-42867000	Weak transcription	Ovary	ovary
4	chr15:42842200-42856000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
6	chr15:42842400-42854600	Weak transcription	A549	lung
7	chr15:42842400-42867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:42842600-42855800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:42842600-42867400	Weak transcription	Small Intestine	intestine
10	chr15:42842800-42857400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:42842800-42857400	Weak transcription	Brain Substantia Nigra	brain
12	chr15:42842800-42867000	Weak transcription	Fetal Kidney	kidney
13	chr15:42843000-42863000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:42843600-42857400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42847000-42860000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:42848000-42861400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:42848600-42861200	Strong transcription	Fetal Intestine Large	intestine
18	chr15:42849200-42861400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:42849400-42866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:42849600-42859600	Strong transcription	K562	blood
21	chr15:42849800-42854400	Strong transcription	Hela-S3	cervix
22	chr15:42849800-42859800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:42849800-42859800	Strong transcription	Dnd41	blood
24	chr15:42849800-42860000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:42849800-42860000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:42849800-42860400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:42849800-42861000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:42849800-42861200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:42849800-42861200	Strong transcription	GM12878-XiMat	blood
30	chr15:42849800-42862800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:42850000-42859400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:42850000-42861400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:42850000-42862800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:42850200-42856800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr15:42850200-42859800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:42850200-42859800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:42850200-42861000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:42850200-42861200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:42850200-42861200	Strong transcription	Primary T cells from cord blood	blood
40	chr15:42850400-42859800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:42850400-42861200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:42850400-42861200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:42850600-42859800	Strong transcription	Thymus	Thymus
44	chr15:42850600-42860600	Strong transcription	Fetal Intestine Small	intestine
45	chr15:42850600-42861200	Strong transcription	Fetal Thymus	thymus
46	chr15:42850800-42854600	Strong transcription	HMEC	breast
47	chr15:42850800-42855200	Strong transcription	HepG2	liver
48	chr15:42850800-42859600	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:42850800-42861000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:42850800-42861000	Strong transcription	Brain Germinal Matrix	brain

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