Variant report

Variant	rs73406557
Chromosome Location	chr15:42868515-42868516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155903608..155904383-chr15:42867723..42868723,3	Hela-S3	cervix:
2	chr15:42866660..42868750-chr15:42872207..42873779,2	K562	blood:
3	chr15:42838345..42842657-chr15:42865696..42868936,4	MCF-7	breast:
4	chr15:42867826..42868650-chr21:36260005..36261002,2	Hela-S3	cervix:
5	chr15:42866281..42869584-chr15:42871180..42873707,4	K562	blood:
6	chr15:42838709..42841070-chr15:42866779..42868984,2	MCF-7	breast:
7	chr15:42840090..42842755-chr15:42865653..42870684,5	K562	blood:
8	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:
9	chr15:42801179..42804150-chr15:42867351..42869271,2	K562	blood:
10	chr15:42867986..42870891-chr15:43024060..43026740,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261822	Chromatin interaction
ENSG00000260282	Chromatin interaction
ENSG00000159216	Chromatin interaction
ENSG00000092531	Chromatin interaction
ENSG00000180979	Chromatin interaction
ENSG00000137814	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000260490	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1044866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11541527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973349	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5009460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249373	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57349778	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58122107	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58562675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60060355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60606292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60697170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839827	1.00[AMR][1000 genomes]
rs61368952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474811	0.85[AMR][1000 genomes]
rs6493048	0.85[AFR][1000 genomes]
rs6493049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493050	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166633	0.87[AMR][1000 genomes]
rs7172064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175059	0.87[AMR][1000 genomes]
rs7178822	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402762	0.85[AMR][1000 genomes]
rs73402776	0.85[AMR][1000 genomes]
rs73402796	0.87[AMR][1000 genomes]
rs73404708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404754	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs768118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033810	1.00[AMR][1000 genomes]
rs8034001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036927	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8037277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42867000-42868600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:42867000-42868600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr15:42867000-42868600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr15:42867000-42868600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr15:42867000-42868600	Active TSS	HSMMtube	muscle
6	chr15:42867000-42868800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:42867000-42868800	Active TSS	Psoas Muscle	Psoas
8	chr15:42867000-42869000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:42867000-42869000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:42867000-42869000	Active TSS	Fetal Kidney	kidney
11	chr15:42867000-42869000	Active TSS	Right Atrium	heart
12	chr15:42867200-42868600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:42867200-42868600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:42867200-42868600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:42867200-42868600	Active TSS	Colon Smooth Muscle	Colon
16	chr15:42867200-42868600	Active TSS	Esophagus	oesophagus
17	chr15:42867200-42868800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:42867200-42868800	Active TSS	Lung	lung
19	chr15:42867200-42868800	Active TSS	Right Ventricle	heart
20	chr15:42867200-42869000	Active TSS	Ovary	ovary
21	chr15:42867400-42868600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:42867400-42868600	Active TSS	Brain Cingulate Gyrus	brain
23	chr15:42867400-42868600	Active TSS	Fetal Stomach	stomach
24	chr15:42867400-42868600	Active TSS	Gastric	stomach
25	chr15:42867400-42869000	Active TSS	Left Ventricle	heart
26	chr15:42867400-42869000	Active TSS	NHDF-Ad	bronchial
27	chr15:42867400-42869200	Active TSS	Fetal Muscle Trunk	muscle
28	chr15:42867400-42870200	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr15:42867800-42868800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr15:42867800-42868800	Active TSS	Aorta	Aorta
31	chr15:42867800-42869200	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr15:42868000-42868600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr15:42868000-42868600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:42868000-42868600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr15:42868000-42868600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:42868000-42868600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:42868000-42868600	Flanking Active TSS	Liver	Liver
38	chr15:42868000-42868600	Active TSS	Fetal Brain Male	brain
39	chr15:42868000-42868800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:42868000-42868800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
41	chr15:42868000-42868800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
42	chr15:42868000-42868800	Flanking Active TSS	HMEC	breast
43	chr15:42868000-42869000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr15:42868000-42869000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr15:42868000-42869200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:42868000-42870000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr15:42868200-42868600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr15:42868200-42868600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr15:42868200-42868600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:42868200-42868600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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