Variant report

Variant	rs73402776
Chromosome Location	chr15:42765840-42765841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42764544..42766246-chr15:42776055..42778062,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1044866	0.85[AMR][1000 genomes]
rs11541527	0.85[AMR][1000 genomes]
rs16973349	0.85[AMR][1000 genomes]
rs5009460	0.85[AMR][1000 genomes]
rs57249373	0.85[AMR][1000 genomes]
rs58562675	0.85[AMR][1000 genomes]
rs58952814	0.85[AMR][1000 genomes]
rs59058205	0.85[AMR][1000 genomes]
rs59091063	0.85[AMR][1000 genomes]
rs60060355	0.85[AMR][1000 genomes]
rs60168929	0.85[AMR][1000 genomes]
rs60606292	0.85[AMR][1000 genomes]
rs60697170	0.85[AMR][1000 genomes]
rs60839827	0.85[AMR][1000 genomes]
rs61368952	0.85[AMR][1000 genomes]
rs61474811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493049	0.85[AMR][1000 genomes]
rs6493050	0.85[AMR][1000 genomes]
rs7166143	0.85[AMR][1000 genomes]
rs7172064	0.85[AMR][1000 genomes]
rs7172955	0.85[AMR][1000 genomes]
rs7173155	0.85[AMR][1000 genomes]
rs7178822	0.85[AMR][1000 genomes]
rs7181938	0.85[AMR][1000 genomes]
rs73402762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404708	0.85[AMR][1000 genomes]
rs73404711	0.85[AMR][1000 genomes]
rs73404725	0.85[AMR][1000 genomes]
rs73404729	0.85[AMR][1000 genomes]
rs73404744	0.85[AMR][1000 genomes]
rs73404746	0.85[AMR][1000 genomes]
rs73404758	0.85[AMR][1000 genomes]
rs73404768	0.85[AMR][1000 genomes]
rs73404774	0.85[AMR][1000 genomes]
rs73404775	0.85[AMR][1000 genomes]
rs73404793	0.85[AMR][1000 genomes]
rs73404797	0.85[AMR][1000 genomes]
rs73406503	0.85[AMR][1000 genomes]
rs73406505	0.85[AMR][1000 genomes]
rs73406509	0.85[AMR][1000 genomes]
rs73406526	0.85[AMR][1000 genomes]
rs73406531	0.85[AMR][1000 genomes]
rs73406544	0.85[AMR][1000 genomes]
rs73406553	0.85[AMR][1000 genomes]
rs73406557	0.85[AMR][1000 genomes]
rs768118	0.85[AMR][1000 genomes]
rs8023948	0.85[AMR][1000 genomes]
rs8027207	0.85[AMR][1000 genomes]
rs8031383	0.85[AMR][1000 genomes]
rs8031883	0.85[AMR][1000 genomes]
rs8033555	0.85[AMR][1000 genomes]
rs8033810	0.85[AMR][1000 genomes]
rs8034001	0.85[AMR][1000 genomes]
rs8035877	0.85[AMR][1000 genomes]
rs8037277	0.85[AMR][1000 genomes]
rs8040624	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:42744200-42767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:42744200-42781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:42744200-42782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:42750000-42782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:42750200-42766400	Weak transcription	Right Ventricle	heart
7	chr15:42750200-42782400	Weak transcription	Aorta	Aorta
8	chr15:42750600-42766800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:42750800-42782400	Weak transcription	Ovary	ovary
10	chr15:42751000-42782400	Weak transcription	Fetal Lung	lung
11	chr15:42754600-42782400	Weak transcription	HSMMtube	muscle
12	chr15:42756000-42777600	Weak transcription	Lung	lung
13	chr15:42756000-42782600	Weak transcription	Esophagus	oesophagus
14	chr15:42756200-42782400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:42757800-42782600	Weak transcription	Gastric	stomach
16	chr15:42758000-42781600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:42758000-42782400	Weak transcription	NHLF	lung
18	chr15:42758200-42766200	Weak transcription	NH-A	brain
19	chr15:42758200-42766600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:42758200-42766600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:42758200-42770600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:42758200-42770800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:42758200-42776200	Weak transcription	HepG2	liver
24	chr15:42758200-42781600	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:42758200-42781600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:42758200-42781800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:42758400-42766000	Weak transcription	Left Ventricle	heart
28	chr15:42758400-42766600	Weak transcription	Adipose Nuclei	Adipose
29	chr15:42758400-42766600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:42758400-42775400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:42758400-42775400	Weak transcription	Spleen	Spleen
32	chr15:42758400-42776800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:42758400-42780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:42758400-42780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:42758400-42780600	Weak transcription	NHEK	skin
36	chr15:42758400-42781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:42758400-42781800	Weak transcription	Brain Anterior Caudate	brain
38	chr15:42758400-42782200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:42758400-42782200	Weak transcription	Fetal Brain Female	brain
40	chr15:42758400-42782200	Weak transcription	Thymus	Thymus
41	chr15:42759800-42766600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:42759800-42782200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:42760000-42766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:42760200-42775000	Weak transcription	Primary B cells from cord blood	blood
45	chr15:42761400-42782000	Weak transcription	Fetal Stomach	stomach
46	chr15:42761600-42775000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:42761800-42766200	Strong transcription	Primary T cells from cord blood	blood
48	chr15:42761800-42782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:42762400-42766200	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:42762400-42766800	Weak transcription	Fetal Intestine Small	intestine

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