Variant report

Variant	rs7166143
Chromosome Location	chr15:42866700-42866701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:42866651-42866843	K562	blood:	n/a	n/a
2	CEBPD	chr15:42866559-42866867	K562	blood:	n/a	n/a
3	TAL1	chr15:42866504-42866857	K562	blood:	n/a	n/a
4	MXI1	chr15:42866252-42869441	SK-N-SH	brain:	n/a	n/a
5	MYC	chr15:42866609-42866799	K562	blood:	n/a	n/a
6	MXI1	chr15:42866615-42869046	IMR90	lung:	n/a	n/a
7	GATA1	chr15:42866402-42867743	PBDE	blood:	n/a	chr15:42866853-42866864
8	FOXA2	chr15:42866579-42866830	HepG2	liver:	n/a	n/a
9	GATA2	chr15:42866471-42867176	SH-SY5Y	brain:	n/a	n/a
10	MAZ	chr15:42866404-42869009	IMR90	lung:	n/a	chr15:42867809-42867818
11	EP300	chr15:42866570-42866925	K562	blood:	n/a	n/a
12	RCOR1	chr15:42866627-42868511	K562	blood:	n/a	n/a
13	TEAD4	chr15:42866441-42866946	K562	blood:	n/a	n/a
14	FOXA1	chr15:42866536-42866843	HepG2	liver:	n/a	n/a
15	JUND	chr15:42866625-42866882	K562	blood:	n/a	n/a
16	FOXA1	chr15:42866601-42866871	HepG2	liver:	n/a	n/a
17	TBL1XR1	chr15:42866577-42866848	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42866660..42868750-chr15:42872207..42873779,2	K562	blood:
2	chr15:42838345..42842657-chr15:42865696..42868936,4	MCF-7	breast:
3	chr15:42840104..42842482-chr15:42865653..42867827,2	K562	blood:
4	chr15:42862243..42864590-chr15:42865875..42867418,2	K562	blood:
5	chr15:42866281..42869584-chr15:42871180..42873707,4	K562	blood:
6	chr15:42783274..42784836-chr15:42864927..42867645,2	K562	blood:
7	chr15:42840090..42842755-chr15:42865653..42870684,5	K562	blood:
8	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:
9	chr15:42785710..42787693-chr15:42866156..42868186,2	K562	blood:

No data

Variant related genes	Relation type
STARD9	TF binding region
ENSG00000261822	TF binding region
ENSG00000137814	Chromatin interaction
ENSG00000092531	Chromatin interaction
ENSG00000260282	Chromatin interaction
ENSG00000261822	Chromatin interaction
ENSG00000260490	Chromatin interaction
ENSG00000180979	Chromatin interaction
ENSG00000103994	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1044866	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11541527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973349	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5009460	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57249373	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57349778	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58122107	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58562675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58952814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60060355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60606292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60697170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839827	1.00[AMR][1000 genomes]
rs61368952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474811	0.85[AMR][1000 genomes]
rs6493048	0.85[AFR][1000 genomes]
rs6493049	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493050	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166633	0.87[AMR][1000 genomes]
rs7172064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175059	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7178822	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181938	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402762	0.85[AMR][1000 genomes]
rs73402776	0.85[AMR][1000 genomes]
rs73402796	0.87[AMR][1000 genomes]
rs73404708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404754	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73404758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs768118	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027207	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031383	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031883	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033555	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033810	1.00[AMR][1000 genomes]
rs8034001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036927	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8037277	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040624	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976927	chr15:42862948-42868443	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
2	chr15:42841800-42867000	Weak transcription	Ovary	ovary
3	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
4	chr15:42842400-42867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42842600-42867400	Weak transcription	Small Intestine	intestine
6	chr15:42842800-42867000	Weak transcription	Fetal Kidney	kidney
7	chr15:42849400-42866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42852000-42867000	Weak transcription	Colonic Mucosa	Colon
9	chr15:42854200-42867000	Weak transcription	HSMMtube	muscle
10	chr15:42854800-42867000	Weak transcription	Pancreas	Pancrea
11	chr15:42855200-42867000	Weak transcription	Esophagus	oesophagus
12	chr15:42855200-42867800	Weak transcription	Aorta	Aorta
13	chr15:42856000-42867000	Weak transcription	A549	lung
14	chr15:42857600-42867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:42857800-42867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:42857800-42867200	Weak transcription	Spleen	Spleen
17	chr15:42858000-42867000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:42858200-42867000	Weak transcription	Right Ventricle	heart
19	chr15:42858800-42867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:42858800-42867000	Weak transcription	Brain Substantia Nigra	brain
21	chr15:42858800-42867000	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:42859000-42867200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:42859000-42868000	Weak transcription	Fetal Brain Male	brain
24	chr15:42859200-42867000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:42859200-42867000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:42859200-42867000	Weak transcription	Brain Angular Gyrus	brain
27	chr15:42859200-42867000	Weak transcription	Fetal Lung	lung
28	chr15:42859200-42867000	Weak transcription	HSMM	muscle
29	chr15:42859200-42867000	Weak transcription	NH-A	brain
30	chr15:42859200-42867000	Weak transcription	NHEK	skin
31	chr15:42859400-42866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:42859400-42866800	Weak transcription	Hela-S3	cervix
33	chr15:42859400-42867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:42859400-42867000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:42859400-42867000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:42859400-42867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:42859600-42866800	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:42859600-42866800	Weak transcription	Placenta	Placenta
39	chr15:42859600-42867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:42859600-42867000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:42859600-42867000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:42859600-42867000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:42859600-42867000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:42859600-42867000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr15:42859600-42867000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:42859600-42867000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:42859600-42867400	Weak transcription	Gastric	stomach
48	chr15:42859800-42866800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr15:42859800-42866800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:42859800-42866800	Weak transcription	Thymus	Thymus

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