Variant report

Variant	rs61474811
Chromosome Location	chr15:42759131-42759132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1044866	0.85[AMR][1000 genomes]
rs11541527	0.85[AMR][1000 genomes]
rs16973349	0.85[AMR][1000 genomes]
rs5009460	0.85[AMR][1000 genomes]
rs57249373	0.85[AMR][1000 genomes]
rs58562675	0.85[AMR][1000 genomes]
rs58952814	0.85[AMR][1000 genomes]
rs59058205	0.85[AMR][1000 genomes]
rs59091063	0.85[AMR][1000 genomes]
rs60060355	0.85[AMR][1000 genomes]
rs60168929	0.85[AMR][1000 genomes]
rs60606292	0.85[AMR][1000 genomes]
rs60697170	0.85[AMR][1000 genomes]
rs60839827	0.85[AMR][1000 genomes]
rs61368952	0.85[AMR][1000 genomes]
rs6493049	0.85[AMR][1000 genomes]
rs6493050	0.85[AMR][1000 genomes]
rs7166143	0.85[AMR][1000 genomes]
rs7172064	0.85[AMR][1000 genomes]
rs7172955	0.85[AMR][1000 genomes]
rs7173155	0.85[AMR][1000 genomes]
rs7178822	0.85[AMR][1000 genomes]
rs7181938	0.85[AMR][1000 genomes]
rs73402762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404708	0.85[AMR][1000 genomes]
rs73404711	0.85[AMR][1000 genomes]
rs73404725	0.85[AMR][1000 genomes]
rs73404729	0.85[AMR][1000 genomes]
rs73404744	0.85[AMR][1000 genomes]
rs73404746	0.85[AMR][1000 genomes]
rs73404758	0.85[AMR][1000 genomes]
rs73404768	0.85[AMR][1000 genomes]
rs73404774	0.85[AMR][1000 genomes]
rs73404775	0.85[AMR][1000 genomes]
rs73404793	0.85[AMR][1000 genomes]
rs73404797	0.85[AMR][1000 genomes]
rs73406503	0.85[AMR][1000 genomes]
rs73406505	0.85[AMR][1000 genomes]
rs73406509	0.85[AMR][1000 genomes]
rs73406526	0.85[AMR][1000 genomes]
rs73406531	0.85[AMR][1000 genomes]
rs73406544	0.85[AMR][1000 genomes]
rs73406553	0.85[AMR][1000 genomes]
rs73406557	0.85[AMR][1000 genomes]
rs768118	0.85[AMR][1000 genomes]
rs8023948	0.85[AMR][1000 genomes]
rs8027207	0.85[AMR][1000 genomes]
rs8031383	0.85[AMR][1000 genomes]
rs8031883	0.85[AMR][1000 genomes]
rs8033555	0.85[AMR][1000 genomes]
rs8033810	0.85[AMR][1000 genomes]
rs8034001	0.85[AMR][1000 genomes]
rs8035877	0.85[AMR][1000 genomes]
rs8037277	0.85[AMR][1000 genomes]
rs8040624	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:42720400-42759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:42737200-42764800	Weak transcription	A549	lung
4	chr15:42744200-42762200	Weak transcription	K562	blood
5	chr15:42744200-42763200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:42744200-42767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:42744200-42781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:42744200-42782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:42749200-42761800	Weak transcription	Brain Germinal Matrix	brain
10	chr15:42749600-42764600	Weak transcription	Colonic Mucosa	Colon
11	chr15:42750000-42782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:42750200-42763600	Weak transcription	Right Atrium	heart
13	chr15:42750200-42766400	Weak transcription	Right Ventricle	heart
14	chr15:42750200-42782400	Weak transcription	Aorta	Aorta
15	chr15:42750400-42761600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:42750400-42762800	Weak transcription	HMEC	breast
17	chr15:42750400-42765000	Weak transcription	Fetal Brain Male	brain
18	chr15:42750600-42760400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:42750600-42761400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:42750600-42761400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:42750600-42761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:42750600-42763200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:42750600-42766800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:42750800-42763400	Weak transcription	Psoas Muscle	Psoas
25	chr15:42750800-42764400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:42750800-42782400	Weak transcription	Ovary	ovary
27	chr15:42751000-42782400	Weak transcription	Fetal Lung	lung
28	chr15:42751200-42759200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:42753200-42764000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr15:42753400-42759400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:42753600-42764000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:42754200-42763200	Weak transcription	Fetal Heart	heart
33	chr15:42754200-42764600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:42754600-42764600	Weak transcription	Small Intestine	intestine
35	chr15:42754600-42782400	Weak transcription	HSMMtube	muscle
36	chr15:42755000-42763600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:42755400-42759600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:42755400-42759800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:42756000-42762800	Weak transcription	HSMM	muscle
40	chr15:42756000-42777600	Weak transcription	Lung	lung
41	chr15:42756000-42782600	Weak transcription	Esophagus	oesophagus
42	chr15:42756200-42782400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:42756400-42760200	Strong transcription	Primary B cells from cord blood	blood
44	chr15:42756600-42763600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:42757200-42759800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:42757800-42759800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:42757800-42760200	Weak transcription	Fetal Stomach	stomach
48	chr15:42757800-42763200	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:42757800-42782600	Weak transcription	Gastric	stomach
50	chr15:42758000-42764800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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