Variant report

Variant	rs59374111
Chromosome Location	chr1:211207698-211207699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211203078..211205733-chr1:211206241..211207793,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10494931	0.94[ASN][1000 genomes]
rs10494932	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119658	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11119664	0.98[ASN][1000 genomes]
rs11578692	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11579078	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582507	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11583101	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11588573	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12074568	0.94[ASN][1000 genomes]
rs12121565	0.82[ASN][1000 genomes]
rs12722738	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12750194	0.92[AFR][1000 genomes]
rs12750762	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12751504	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12752336	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12756697	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12760791	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1393028	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1501558	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1501560	0.82[ASN][1000 genomes]
rs17188741	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17188748	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17188797	0.92[ASN][1000 genomes]
rs2134108	0.82[ASN][1000 genomes]
rs2221250	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33985151	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34773128	0.82[ASN][1000 genomes]
rs34827659	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35019263	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35711968	0.96[AFR][1000 genomes]
rs4262610	0.98[ASN][1000 genomes]
rs4314946	0.93[AFR][1000 genomes]
rs4638187	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56260926	0.94[ASN][1000 genomes]
rs61850226	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6683856	0.82[ASN][1000 genomes]
rs6697578	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6702598	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7414286	0.92[ASN][1000 genomes]
rs7519090	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9662051	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
3	chr1:211194400-211209200	Weak transcription	HSMM	muscle
4	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:211207400-211207800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:211207600-211207800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:211207600-211208000	Enhancers	Fetal Brain Male	brain

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