Variant report

Variant	rs59806222
Chromosome Location	chr15:31622415-31622416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31608249..31610861-chr15:31620080..31623099,3	K562	blood:
2	chr15:31608249..31610861-chr15:31620873..31623099,2	K562	blood:
3	chr15:31618267..31621353-chr15:31621763..31625829,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55746757	0.86[AFR][1000 genomes]
rs56026888	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56323816	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56345334	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56806445	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60067664	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60450596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60836875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60877973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493585	0.83[AMR][1000 genomes]
rs7161899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180819	0.83[AMR][1000 genomes]
rs7182887	1.00[AMR][1000 genomes]
rs7183839	1.00[AMR][1000 genomes]
rs74010606	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010607	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010608	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010609	0.92[AFR][1000 genomes]
rs74010610	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010614	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032404	0.87[AFR][1000 genomes]
rs968594	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv542319	chr15:31605961-31628938	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
17	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
18	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
20	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
21	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31617800-31622600	Active TSS	Rectal Smooth Muscle	rectum
2	chr15:31620800-31623200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr15:31620800-31632600	Enhancers	Fetal Heart	heart
4	chr15:31621000-31622600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:31621000-31622600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr15:31621000-31622600	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr15:31621000-31623000	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr15:31621000-31624000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr15:31621000-31624600	Transcr. at gene 5' and 3'	Dnd41	blood
10	chr15:31621000-31624800	Weak transcription	Ovary	ovary
11	chr15:31621000-31626600	Transcr. at gene 5' and 3'	Thymus	Thymus
12	chr15:31621200-31622600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:31621200-31622800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:31621200-31623000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:31621200-31623200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:31621200-31623200	Flanking Active TSS	Colonic Mucosa	Colon
17	chr15:31621400-31623400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:31621400-31624400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:31621400-31625000	Enhancers	Fetal Muscle Leg	muscle
20	chr15:31621400-31625200	Enhancers	Fetal Brain Male	brain
21	chr15:31621400-31626000	Weak transcription	Aorta	Aorta
22	chr15:31621600-31622600	Enhancers	NHDF-Ad	bronchial
23	chr15:31621600-31623000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:31621600-31623000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:31621600-31623200	Enhancers	HSMM	muscle
26	chr15:31621600-31623400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:31621600-31623600	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr15:31621600-31624000	Enhancers	Fetal Lung	lung
29	chr15:31621600-31624200	Weak transcription	K562	blood
30	chr15:31621600-31625000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr15:31621600-31637200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:31621800-31622600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:31621800-31622600	Enhancers	Placenta	Placenta
34	chr15:31621800-31622600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:31621800-31622800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:31621800-31622800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:31621800-31622800	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr15:31621800-31622800	Enhancers	Colon Smooth Muscle	Colon
39	chr15:31621800-31622800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr15:31621800-31623000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:31621800-31624400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr15:31621800-31624600	Genic enhancers	Spleen	Spleen
43	chr15:31621800-31625000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr15:31621800-31625200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
45	chr15:31621800-31630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:31621800-31636000	Enhancers	Small Intestine	intestine
47	chr15:31621800-31637600	Enhancers	Psoas Muscle	Psoas
48	chr15:31622000-31622600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:31622000-31622600	Transcr. at gene 5' and 3'	Lung	lung
50	chr15:31622000-31622600	Flanking Active TSS	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links