Variant report

Variant	rs7180819
Chromosome Location	chr15:31603567-31603568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31595555..31597480-chr15:31602302..31603930,2	MCF-7	breast:
2	chr15:31597476..31599071-chr15:31602253..31605073,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55746757	0.83[AMR][1000 genomes]
rs56026888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56323816	0.83[AMR][1000 genomes]
rs56345334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56806445	1.00[AMR][1000 genomes]
rs59806222	0.83[AMR][1000 genomes]
rs60067664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60450596	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60836875	0.83[AMR][1000 genomes]
rs60877973	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6493585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161899	0.83[AMR][1000 genomes]
rs7182887	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7183839	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73381273	0.83[AMR][1000 genomes]
rs74010606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010608	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010609	0.83[AMR][1000 genomes]
rs74010610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010611	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010614	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010615	0.83[AMR][1000 genomes]
rs8032404	0.83[AMR][1000 genomes]
rs968594	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31599800-31604400	Weak transcription	Brain Angular Gyrus	brain
2	chr15:31600800-31608400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:31601200-31605600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:31601200-31605600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:31601400-31606400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:31601600-31604000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:31601600-31605200	Enhancers	Fetal Thymus	thymus
8	chr15:31601800-31604000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:31601800-31604400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:31601800-31605600	Enhancers	Thymus	Thymus
11	chr15:31602400-31604200	Weak transcription	Brain Germinal Matrix	brain
12	chr15:31602600-31604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:31602800-31603800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:31602800-31604200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:31602800-31604400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:31602800-31604600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:31603000-31604200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:31603000-31604600	Weak transcription	Primary T cells from cord blood	blood

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