Variant report

Variant	rs74010608
Chromosome Location	chr15:31612305-31612306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31592714..31596945-chr15:31609581..31612731,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55746757	0.83[AMR][1000 genomes]
rs56026888	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56323816	0.83[AMR][1000 genomes]
rs56345334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56806445	1.00[AMR][1000 genomes]
rs59806222	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60067664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60450596	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60836875	0.83[AMR][1000 genomes]
rs60877973	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6493585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161899	0.83[AMR][1000 genomes]
rs7180819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182887	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7183839	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73381273	0.83[AMR][1000 genomes]
rs74010606	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010609	0.83[AMR][1000 genomes]
rs74010610	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010611	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010614	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010615	0.83[AMR][1000 genomes]
rs8032404	0.83[AMR][1000 genomes]
rs968594	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv542319	chr15:31605961-31628938	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31605200-31613600	Weak transcription	Stomach Mucosa	stomach
2	chr15:31606800-31617200	Weak transcription	Spleen	Spleen
3	chr15:31607800-31615800	Enhancers	Thymus	Thymus
4	chr15:31607800-31616800	Enhancers	Fetal Thymus	thymus
5	chr15:31609200-31617000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:31609600-31616800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:31609800-31614200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:31609800-31616000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:31610000-31614200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:31610000-31616600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:31610000-31616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:31610200-31612400	Weak transcription	Pancreas	Pancrea
13	chr15:31610400-31616200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:31610400-31617000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:31610400-31617200	Weak transcription	Fetal Brain Female	brain
16	chr15:31610600-31616000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:31610800-31612400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:31610800-31616200	Weak transcription	Fetal Lung	lung
19	chr15:31610800-31617000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:31611000-31613000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:31611600-31612400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:31611600-31612400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr15:31611600-31612400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:31611600-31612600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:31611600-31612600	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:31611600-31612600	Enhancers	Primary T cells from cord blood	blood
27	chr15:31611600-31613200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr15:31611600-31613200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr15:31611800-31612400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr15:31611800-31612400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr15:31611800-31612600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:31611800-31612800	Enhancers	HepG2	liver
33	chr15:31612000-31612400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr15:31612000-31612800	Enhancers	Dnd41	blood
35	chr15:31612000-31617000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:31612200-31614600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:31612200-31615000	Weak transcription	Primary B cells from cord blood	blood

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