Variant report

Variant	rs56323816
Chromosome Location	chr15:31626158-31626159
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31617749..31621012-chr15:31623649..31627723,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56026888	0.83[AMR][1000 genomes]
rs56345334	0.83[AMR][1000 genomes]
rs56806445	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59806222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067664	0.83[AMR][1000 genomes]
rs60450596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60836875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60877973	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493585	0.83[AMR][1000 genomes]
rs7161899	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180819	0.83[AMR][1000 genomes]
rs7182887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183839	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010606	0.83[AMR][1000 genomes]
rs74010607	0.83[AMR][1000 genomes]
rs74010608	0.83[AMR][1000 genomes]
rs74010609	0.83[AFR][1000 genomes]
rs74010610	0.83[AMR][1000 genomes]
rs74010611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010614	1.00[AMR][1000 genomes]
rs74010615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs968594	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv542319	chr15:31605961-31628938	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
17	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
18	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
20	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
21	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv1052942	chr15:31624164-31653633	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31620800-31632600	Enhancers	Fetal Heart	heart
2	chr15:31621000-31626600	Transcr. at gene 5' and 3'	Thymus	Thymus
3	chr15:31621600-31637200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:31621800-31630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:31621800-31636000	Enhancers	Small Intestine	intestine
6	chr15:31621800-31637600	Enhancers	Psoas Muscle	Psoas
7	chr15:31622000-31630600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:31622000-31634600	Enhancers	Stomach Mucosa	stomach
9	chr15:31622000-31637600	Enhancers	Left Ventricle	heart
10	chr15:31622200-31630200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:31622200-31630400	Weak transcription	NH-A	brain
12	chr15:31622200-31630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:31622200-31633200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:31622400-31628000	Enhancers	Adipose Nuclei	Adipose
15	chr15:31622400-31631600	Enhancers	Right Ventricle	heart
16	chr15:31622600-31627000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:31622600-31630200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:31622600-31630200	Weak transcription	NHLF	lung
19	chr15:31622600-31630400	Enhancers	Gastric	stomach
20	chr15:31622600-31640200	Enhancers	Pancreas	Pancrea
21	chr15:31622800-31626400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:31622800-31627000	Enhancers	Brain Anterior Caudate	brain
23	chr15:31622800-31627800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr15:31622800-31630600	Enhancers	Brain Angular Gyrus	brain
25	chr15:31622800-31657400	Enhancers	Right Atrium	heart
26	chr15:31623000-31627200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:31623000-31627200	Enhancers	Brain Substantia Nigra	brain
28	chr15:31623000-31630400	Enhancers	Brain Hippocampus Middle	brain
29	chr15:31623000-31630600	Weak transcription	A549	lung
30	chr15:31623200-31626400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr15:31623200-31627000	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:31623200-31627200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr15:31623200-31627200	Weak transcription	HSMM	muscle
34	chr15:31623400-31627000	Weak transcription	Fetal Stomach	stomach
35	chr15:31623400-31629400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:31623400-31637200	Enhancers	Liver	Liver
37	chr15:31623600-31628000	Enhancers	Brain Germinal Matrix	brain
38	chr15:31623600-31629800	Weak transcription	HSMMtube	muscle
39	chr15:31623800-31626400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:31623800-31626800	Enhancers	Primary B cells from cord blood	blood
41	chr15:31623800-31627200	Enhancers	Primary B cells from peripheral blood	blood
42	chr15:31623800-31630000	Weak transcription	HMEC	breast
43	chr15:31623800-31634600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:31624000-31630400	Weak transcription	Fetal Intestine Large	intestine
45	chr15:31624200-31626200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr15:31624200-31628200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:31624400-31627000	Weak transcription	Hela-S3	cervix
48	chr15:31624400-31627800	Enhancers	Duodenum Mucosa	Duodenum
49	chr15:31624400-31627800	Weak transcription	NHEK	skin
50	chr15:31624400-31630200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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