Variant report

Variant	rs74010611
Chromosome Location	chr15:31620885-31620886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31618168..31621382-chr15:31631982..31634646,4	MCF-7	breast:
2	chr15:31618838..31621702-chr15:31631313..31632972,2	MCF-7	breast:
3	chr15:31608249..31610861-chr15:31620080..31623099,3	K562	blood:
4	chr15:31608249..31610861-chr15:31620873..31623099,2	K562	blood:
5	chr15:31507074..31509248-chr15:31619187..31621529,2	MCF-7	breast:
6	chr15:31618253..31621608-chr15:31655043..31658553,3	K562	blood:

Variant related genes	Relation type
ENSG00000259448	Chromatin interaction
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55746757	0.83[AFR][1000 genomes]
rs56026888	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56323816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56345334	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56806445	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59806222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067664	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60450596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60836875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60877973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493585	0.83[AMR][1000 genomes]
rs7161899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180819	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7182887	1.00[AMR][1000 genomes]
rs7183839	1.00[AMR][1000 genomes]
rs74010606	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010607	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010608	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010609	0.90[AFR][1000 genomes]
rs74010610	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010614	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74010615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032404	0.84[AFR][1000 genomes]
rs968594	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv542318	chr15:31601016-31628938	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv542319	chr15:31605961-31628938	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
17	nsv568774	chr15:31616674-31620943	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
19	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	esv3322979	chr15:31617060-31621658	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv827280	chr15:31617536-31621947	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	esv3416843	chr15:31617660-31621758	Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	esv12399	chr15:31617831-31621038	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
24	esv1824341	chr15:31617859-31621321	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	esv1796996	chr15:31617877-31620943	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	esv1797741	chr15:31617877-31620943	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
27	nsv568781	chr15:31617877-31620943	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	esv3487683	chr15:31617885-31622158	Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	esv3487684	chr15:31617885-31622158	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	nsv568786	chr15:31618113-31621321	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv568792	chr15:31618284-31620943	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
32	nsv568796	chr15:31618523-31620943	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
33	esv3358300	chr15:31618685-31622033	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	esv1823395	chr15:31618900-31621321	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31617200-31621200	Active TSS	Placenta Amnion	Placenta Amnion
2	chr15:31617200-31621800	Active TSS	Left Ventricle	heart
3	chr15:31617400-31621000	Active TSS	NH-A	brain
4	chr15:31617400-31621800	Active TSS	GM12878-XiMat	blood
5	chr15:31617400-31622000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:31617400-31622000	Active TSS	Esophagus	oesophagus
7	chr15:31617400-31622400	Active TSS	Gastric	stomach
8	chr15:31617600-31621000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:31617600-31621000	Active TSS	Thymus	Thymus
10	chr15:31617600-31621000	Active TSS	A549	lung
11	chr15:31617600-31621200	Active TSS	Aorta	Aorta
12	chr15:31617600-31621200	Active TSS	Right Ventricle	heart
13	chr15:31617600-31621400	Active TSS	Spleen	Spleen
14	chr15:31617600-31621600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:31617600-31621600	Active TSS	Sigmoid Colon	Sigmoid Colon
16	chr15:31617600-31621800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:31617600-31621800	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr15:31617600-31621800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:31617600-31621800	Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr15:31617600-31621800	Active TSS	Lung	lung
21	chr15:31617600-31621800	Active TSS	Small Intestine	intestine
22	chr15:31617600-31621800	Active TSS	NHLF	lung
23	chr15:31617600-31622000	Active TSS	Brain Angular Gyrus	brain
24	chr15:31617600-31622000	Active TSS	Fetal Intestine Small	intestine
25	chr15:31617600-31622200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:31617600-31622200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr15:31617600-31622200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr15:31617800-31621000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:31617800-31621000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:31617800-31621000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:31617800-31621000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:31617800-31621000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:31617800-31621000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:31617800-31621000	Active TSS	Muscle Satellite Cultured Cells	--
35	chr15:31617800-31621000	Active TSS	Brain Anterior Caudate	brain
36	chr15:31617800-31621000	Active TSS	Brain Hippocampus Middle	brain
37	chr15:31617800-31621000	Active TSS	Brain Substantia Nigra	brain
38	chr15:31617800-31621000	Active TSS	Duodenum Mucosa	Duodenum
39	chr15:31617800-31621000	Active TSS	Fetal Stomach	stomach
40	chr15:31617800-31621000	Active TSS	Fetal Thymus	thymus
41	chr15:31617800-31621000	Active TSS	Ovary	ovary
42	chr15:31617800-31621000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr15:31617800-31621000	Active TSS	HUVEC	blood vessel
44	chr15:31617800-31621000	Active TSS	K562	blood
45	chr15:31617800-31621000	Active TSS	Osteobl	bone
46	chr15:31617800-31621200	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr15:31617800-31621200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:31617800-31621200	Active TSS	Colonic Mucosa	Colon
49	chr15:31617800-31621200	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr15:31617800-31621400	Active TSS	Primary T helper naive cells from peripheral blood	blood

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