Variant report

Variant	rs60174455
Chromosome Location	chr13:53735270-53735271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55789421	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56114342	0.93[AMR][1000 genomes]
rs56983824	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57694479	0.87[AMR][1000 genomes]
rs57736323	0.87[AMR][1000 genomes]
rs58606612	0.81[AMR][1000 genomes]
rs60146847	0.87[AMR][1000 genomes]
rs60604014	0.81[AMR][1000 genomes]
rs7326595	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73480941	0.87[AMR][1000 genomes]
rs73480958	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73483509	0.93[AMR][1000 genomes]
rs74086440	0.87[AMR][1000 genomes]
rs74086712	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086719	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086727	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086733	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086787	0.87[AMR][1000 genomes]
rs74086791	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74090326	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74090335	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74090344	0.81[AMR][1000 genomes]
rs74090352	0.81[AMR][1000 genomes]
rs7988111	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7991958	0.93[AFR][1000 genomes]
rs7995056	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53733400-53736200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr13:53733600-53735400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53733600-53735800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:53734000-53739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:53734200-53739000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:53734600-53736000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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