Variant report

Variant	rs74086727
Chromosome Location	chr13:53749113-53749114
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55789421	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56114342	1.00[AMR][1000 genomes]
rs56983824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57694479	0.93[AMR][1000 genomes]
rs57736323	0.93[AMR][1000 genomes]
rs58606612	0.87[AMR][1000 genomes]
rs60146847	0.93[AMR][1000 genomes]
rs60174455	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60604014	0.87[AMR][1000 genomes]
rs7326595	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480941	0.93[AMR][1000 genomes]
rs73480958	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086440	0.93[AMR][1000 genomes]
rs74086712	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086787	0.93[AMR][1000 genomes]
rs74086791	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090326	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090335	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090344	0.87[AMR][1000 genomes]
rs74090352	0.87[AMR][1000 genomes]
rs7988111	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7991958	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7995056	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53745400-53750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53748200-53749400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:53748800-53749200	Bivalent Enhancer	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links