Variant report

Variant	rs74090352
Chromosome Location	chr13:53709230-53709231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55789421	0.87[AMR][1000 genomes]
rs56114342	0.87[AMR][1000 genomes]
rs56983824	0.87[AMR][1000 genomes]
rs57694479	0.81[AMR][1000 genomes]
rs57736323	0.93[AMR][1000 genomes]
rs58606612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60146847	0.81[AMR][1000 genomes]
rs60174455	0.81[AMR][1000 genomes]
rs60604014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7326595	0.87[AMR][1000 genomes]
rs73480913	0.81[AMR][1000 genomes]
rs73480941	0.93[AMR][1000 genomes]
rs73480958	0.93[AMR][1000 genomes]
rs73483509	0.87[AMR][1000 genomes]
rs74086440	0.93[AMR][1000 genomes]
rs74086712	0.87[AMR][1000 genomes]
rs74086719	0.87[AMR][1000 genomes]
rs74086727	0.87[AMR][1000 genomes]
rs74086733	0.87[AMR][1000 genomes]
rs74086787	0.81[AMR][1000 genomes]
rs74086791	0.81[AMR][1000 genomes]
rs74090326	0.93[AMR][1000 genomes]
rs74090335	0.93[AMR][1000 genomes]
rs74090344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7988111	0.93[AMR][1000 genomes]
rs7991958	0.87[AMR][1000 genomes]
rs7995056	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53708800-53715200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:53709000-53709600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53709200-53709400	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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