Variant report

Variant	rs7991958
Chromosome Location	chr13:53725460-53725461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55789421	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56114342	0.86[AMR][1000 genomes]
rs56983824	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58606612	0.87[AMR][1000 genomes]
rs60174455	0.93[AFR][1000 genomes]
rs60604014	0.87[AMR][1000 genomes]
rs7326595	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73480941	0.93[AMR][1000 genomes]
rs73480958	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483509	0.86[AMR][1000 genomes]
rs74086440	0.93[AMR][1000 genomes]
rs74086712	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs74086719	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs74086727	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs74086733	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs74086791	0.83[AFR][1000 genomes]
rs74090326	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090335	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090344	0.87[AMR][1000 genomes]
rs74090352	0.87[AMR][1000 genomes]
rs7988111	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53719400-53725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53719400-53725800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53724400-53725800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:53725000-53725800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:53725200-53725600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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