Variant report

Variant	rs74086791
Chromosome Location	chr13:53779562-53779563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55789421	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56114342	0.93[AMR][1000 genomes]
rs56983824	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57694479	0.87[AMR][1000 genomes]
rs57736323	0.87[AMR][1000 genomes]
rs58606612	0.81[AMR][1000 genomes]
rs60146847	0.87[AMR][1000 genomes]
rs60174455	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60604014	0.81[AMR][1000 genomes]
rs7326595	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73480941	0.87[AMR][1000 genomes]
rs73480958	0.87[AMR][1000 genomes]
rs73483509	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086440	0.87[AMR][1000 genomes]
rs74086712	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086719	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086727	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086733	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086787	0.87[AMR][1000 genomes]
rs74090326	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74090335	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74090344	0.81[AMR][1000 genomes]
rs74090352	0.81[AMR][1000 genomes]
rs7988111	0.87[AMR][1000 genomes]
rs7991958	0.83[AFR][1000 genomes]
rs7995056	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1834091	chr13:53774627-53784083	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv1838050	chr13:53774627-53784083	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1835986	chr13:53774627-53786026	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1840677	chr13:53774627-53791895	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53776200-53781800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53778600-53781800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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